Editor at 06:16, 25 March 2009

2009-03-25T06:16:18Z

Editor at 06:03, 25 March 2009

2009-03-25T06:03:07Z

Editor at 04:48, 25 March 2009

2009-03-25T04:48:43Z

Editor at 04:43, 25 March 2009

2009-03-25T04:43:16Z

Editor at 03:17, 25 March 2009

2009-03-25T03:17:13Z

Editor: New page: =Metabolic Pathways (代謝経路)= {{#repeat:Pathway/Listing/Item|1|{{#SearchTitle:.*|Pathway}}}}

 Pathway name (* not created, ! incomplete) 	Num. of Reactions	Linked Pathways 	com...

2009-03-24T08:26:57Z

New page: =Metabolic Pathways (代謝経路)= {{#repeat:Pathway/Listing/Item|1|{{#SearchTitle:.*|Pathway}}}} <pre> Pathway name (* not created, ! incomplete) Num. of Reactions Linked Pathways com...

New page

=Metabolic Pathways (代謝経路)=

{{#repeat:Pathway/Listing/Item|1|{{#SearchTitle:.*|Pathway}}}}
<pre>
Pathway name (* not created, ! incomplete)
Num. of Reactions Linked Pathways
comments

2-ketoglutarate dehydrogenase complex
3
4-aminobutyrate degradation
2
! myo-inositol biosynthesis
2
mapping
acetate utilization
1
acetoin biosynthesis
3 glycolysis acetoin biosynthesis II butanediol biosynthesis valine biosynthesis
! acetoin biosynthesis II
2* glycolysis acetoin biosynthesis butanediol biosynthesis
mapping
alanine degradation
1
allantoin degradation
5
arginine biosynthesis
8
arginine degradation (aerobic)
6
arginine degradation (anaerobic)
4
asparagine biosynthesis
2
asparagine degradation
2
aspartate biosynthesis 2
2 glycolysis homoserine biosynthesis
! beta-alanine biosynthesis
2 spermidine and methylthioadenosine biosynthesispantothenate and coenzyme A biosynthesis
? Spermine -> Amino-propion aldehyde
mapping
biotin biosynthesis
4
butanediol biosynthesis
1 acetoin biosynthesis acetoin biosynthesis II
butanediol degradation
1 butanediol biosynthesis
* CDP-diacylglycerol biosynthesis
* chitin biosynthesis
chitosan biosynthesis
1
chorismate biosynthesis
7 folate biosynthesis tyrosine biosynthesis tryptophan biosynthesis phenylalanine biosynthesis
citrulline biosynthesis
2 arginine biosynthesis
cysteine biosynthesis from homocysteine
2 homocysteine biosynthesis glutathione biosynthesis
* cysteine biosynthesis/homocysteine degradation
cysteine biosynthesis from homocysteine と同じ
! de novo biosynthesis of purine nucleotides
10 IMPまで
IMP --> deoxy-ATP, IMP --> deoxy-GTP は描いていない
! de novo biosynthesis of pyrimidine deoxyribonucleotides
4 dUTPから
CDP or dCMP --> dUTP, UDP or dUMP --> dUTP は描いていない
de novo biosynthesis of pyrimidine ribonucleotides
9
de novo NAD biosynthesis
9 NAD salvage pathway Nicotinamide riboside salvage pathway I
dehydro-D-arabinono-1,4-lactone biosynthesis
2
* dolichyl glucosyl phosphate biosynthesis
* dolichyl phosphate D-mannose biosynthesis
! ergosterol biosynthesis
12 lanosterol まで
* fatty acid biosynthesis, initial steps
* fatty acid elongation, saturated
* fatty acid elongation, unsaturated
* fatty acid oxidation pathway
* folate biosynthesis
folate biosynthesis II と folate interconversions をあわせたもの
! folate biosynthesis II
8 folate interconversions folate polyglutamylation
chorismate からの経路なし
! folate interconversions
5 folate polyglutamylation de novo biosynthesis of pyrimidine deoxyribonucleotides folate biosynthesis de novo biosynthesis of purine nucleotides
5-methyl-THF への経路なし
* folate polyglutamylation
* folate transformations
! formaldehyde oxidation II (glutathione-dependent)
4
mapping
fructose degradation
1 glycolysis
! galactose degradation
3 UDP-D-galactose まで
! gluconeogenesis
9 malate -> pyruvate -> oxaloacetic acid の経路なし
glutamate biosynthesis from ammonia
1 amino acids biosynthesis folate bio synthesis glutamine biosynthesis
glutamate biosynthesis from glutamine
1 glutamine biosynthesis
glutamate degradation I
3
glutamate degradation IX
1
glutamine biosynthesis
1 glutamate biosynthesis from glutamine
glutathione biosynthesis
2 cysteine biosynthesis from homocysteine glutathione degradation glycine biosynthesis from serine glutamatesynthesis
glutathione degradation
2 glutathione biosynthesis
* glutathione-glutaredoxin redox reactions
* glutathione-glutaredoxin system
glycerol biosynthesis
2 glycolysis
glycerol degradation
2 glycolysis gluconeogenesis
glycine biosynthesis from glyoxylate
1 glyoxylate cycle serine biosynthesis from glyoxylate
glycine biosynthesis from serine
1 serine biosynthesis from 3-phosphoglycerate glutathione biosynthesis
glycine biosynthesis from threonine
1 threonine biosynthesis
* glycine cleavage complex
* glycogen biosynthesis
* glycogen catabolism
glycolysis
8 pentose phosphate pathway superpathway of acetoin and butanediol biosynthesis fructose degradation glycerol biosynthesis
glyoxylate cycle
6 TCA cycle gluconeogenesis glycine biosynthesis from glyoxylate
heme biosynthesis
4 tetrapyrrole biosynthesis
! hexaprenyl diphosphate biosynthesis
3 Geranylgeranyl diphosphate まで
mapping
histidine biosynthesis
10
homocysteine and cysteine interconversion
2 homocysteine biosynthesis
homocysteine biosynthesis
2 homoserine biosynthesis methionine biosynthesis homocysteine and cysteine interconversion cysteine biosynthesis from homocysteine
homoserine biosynthesis
3 aspartate biosynthesis threonine biosynthesis homocysteine biosynthesis
* inositol phosphate biosynthesis
isoleucine biosynthesis
5
! isoleucine degradation
2 2-methylbutanal まで
mapping
L-serine degradation
1
leucine biosynthesis
4
mapping
! leucine degradation
3
mapping
* lipases biosynthesis
* lipid-linked oligosaccharide biosynthesis
lysine biosynthesis
8
! lysine degradation III
6
mapping
mannose degradation
2 glycolysis
! methionine biosynthesis
1 homocysteine biosynthesis S-adenosylmethionine biosynthesis
左側のみ
! methionine salvage pathway
6 spermine and methylthioadenosine biosynthesis spermidine and methylthioadenosine biosynthesis S-adenosylmethionine biosynthesis
mapping
methylglyoxal catabolism
2
! mevalonate pathway
7
mapping
NAD salvage pathway
5 nicotinamide riboside salvage pathway I nicotinamide riboside salvage pathway II nicotinate riboside salvage pathway II nicotinate riboside salvage pathway I de novo NAD biosynthesis
nicotinamide riboside salvage pathway I
2 nicotinamide riboside salvage pathway II de novo NAD biosynthesis NAD salvage pathway
nicotinamide riboside salvage pathway II
1 nicotinamide riboside salvage pathway I NAD salvage pathway
********** nicotinate riboside salvage pathway I
1 nicotinate riboside salvage pathway II NAD salvage pathway
nicotinate riboside salvage pathway II
1 nicotinate riboside salvage pathway I NAD salvage pathway
! non-oxidative branch of the pentose phosphate pathway
4
D-Ribulose 5-phosphate -> D-Xylulose 5-phosphate -> D-Sedoheptulose 7-phosphate -> D-Erythrose 4-phosphate
oxidative branch of the pentose phosphate pathway
3
! p-hydroxybenzoate biosynthesis
6
mapping
chorismate -> p-hydroxybenzoate なし
! pantothenate and coenzyme A biosynthesis
8
spermine からの経路なし
* pentose phosphate pathway
Oxidative branch of the pentose phosphate pathway と non-oxidative branch of the pentose phosphate pathway
periplasmic NAD degradation
2
phenylalanine biosynthesis
3 chorismate biosynthesis
phenylalanine degradation
3
* phosphatidic acid and phospholipid biosynthesis
* phosphatidic acid biosynthesis
* phosphatidylinositol biosynthesis
* phosphatidylinositol phosphate biosynthesis
* phospholipid biosynthesis
* phospholipid biosynthesis (Kennedy pathway)
* phospholipid biosynthesis II (Kennedy pathway)
proline biosynthesis
4
proline utilization
2
* protein modifications
putrescine biosynthesis
1 spermidine and methylthioadenosine biosynthesis
! pyridoxal 5'-phosphate salvage pathway
2
左側のみ
* pyruvate dehydrogenase complex
* removal of superoxide radicals
riboflavin, FMN and FAD biosynthesis
8
Biochemical Pathways に従った
S-adenosylmethionine biosynthesis
1 methionine biosynthesis spermine and methylthioadenosine biosynthesis spermidine and methylthioadenosine biosynthesis S-adenosylmethionine cycle
S-adenosylmethionine cycle に含まれる。
S-adenosylmethionine cycle
4
* salvage pathways of adenine, hypoxanthine and their nucleosides
* salvage pathways of guanine, xanthine and their nucleosides
* salvage pathways of purines and their nucleosides
* salvage pathways of pyrimidine deoxyribonucleotides
* salvage pathways of pyrimidine ribonucleotides
serine biosynthesis from 3-phosphoglycerate
3 glycolysis cysteine biosynthesis from homocysteine glycine biosynthesis from serine
serine biosynthesis from glyoxylate
1 glycine biosynthesis from glyoxylate
! siroheme biosynthesis
3 tetrapyrrole biosynthesis
mapping
! spermidine and methylthioadenosine biosynthesis
1
SAM 側は描いてない
! spermine and methylthioadenosine biosynthesis
1
SAM 側は描いてない
* sphingolipid metabolism
! sucrose degradation
1 fructose degradation superpathway of glucose fermentation
Sucrose -> D-Glucose を描いた
sulfate assimilation pathway
4 homocysteine biosynthesis
* superpathway of acetoin and butanediol biosynthesis
* superpathway of chorismate
* superpathway of glucose fermentation
* superpathway of glutamate biosynthesis
* superpathway of glutathione metabolism (truncated γ-glutamyl cycle)
* superpathway of heme and siroheme biosynthesis
* superpathway of histidine, purine, and pyrimidine biosynthesis
* superpathway of leucine, isoleucine, and valine biosynthesis
* superpathway of methionine biosynthesis
* superpathway of methionine salvage pathway
* superpathway of NAD biosynthesis
* superpathway of phenylalanine, tyrosine and tryptophan biosynthesis
* superpathway of phospholipid biosynthesis
* superpathway of polyamine biosynthesis
* superpathway of purine biosynthesis and salvage pathways
* superpathway of serine and glycine biosynthesis
* superpathway of sulfur amino acid biosynthesis
* superpathway of TCA cycle and glyoxylate cycle
* superpathway of threonine and methionine biosynthesis
* superpathway of threonine biosynthesis
* superpathway of ubiquinone biosynthesis
TCA cycle, aerobic respiration
10
tetrapyrrole biosynthesis
3 heme biosynthesis
* thioredoxin system
threonine biosynthesis
2 homoserine biosynthesis
* threonine degradation
trehalose biosynthesis
2
trehalose degradation
1
* triglyceride biosynthesis
tryptophan biosynthesis
5 chorismate biosynthesis
tryptophan degradation
3
tryptophan degradation via kynurenine
7
tyrosine biosynthesis
3 chorismate biosynthesis
tyrosine degradation
3
! ubiquinone biosynthesis
7
UDP-N-acetylglucosamine biosynthesis
4 chitin biosynthesis
valine biosynthesis
4 glycolysis pantothenate and coenzyme A biosynthesis leucine biosynthesis
valine degradation
3
* very long chain fatty acid biosynthesis
</pre>

Category:MP - Revision history

Editor at 06:16, 25 March 2009

Editor at 06:03, 25 March 2009

Editor at 04:48, 25 March 2009

Editor at 04:43, 25 March 2009

Editor at 03:17, 25 March 2009

Editor: New page: =Metabolic Pathways (代謝経路)= {{#repeat:Pathway/Listing/Item|1|{{#SearchTitle:.|Pathway}}}}
Pathway name ( not created, ! incomplete) Num. of Reactions Linked Pathways com...

@@ Line 197: / Line 197: @@
 ! p-hydroxybenzoate biosynthesis
 	chorismate -> p-hydroxybenzoate なし
 ! pantothenate and coenzyme A biosynthesis

@@ Line 172: / Line 172: @@
 	homocysteine biosynthesis	S-adenosylmethionine biosynthesis
 	左側のみ
-! methionine salvage pathway
+methionine salvage pathway
 	spermine and methylthioadenosine biosynthesis	spermidine and methylthioadenosine biosynthesis	S-adenosylmethionine biosynthesis
 	mapping

@@ Line 165: / Line 165: @@
 lysine biosynthesis
-! lysine degradation III
+lysine degradation III
 mannose degradation
 	glycolysis

@@ Line 152: / Line 152: @@
 isoleucine biosynthesis
-! isoleucine degradation
+isoleucine degradation
-	2-methylbutanal まで
-	mapping
 L-serine degradation
@@ Line 160: / Line 159: @@
 	mapping
-! leucine degradation
+leucine degradation
 * lipases biosynthesis
 * lipid-linked oligosaccharide biosynthesis

@@ Line 59: / Line 59: @@
 * cysteine biosynthesis/homocysteine degradation
 	cysteine biosynthesis from homocysteine と同じ
-! de novo biosynthesis of purine nucleotides
+de novo biosynthesis of purine nucleotides
-	IMPまで
+	De novo biosynthesis of purine nucleotides(deoxy-ATP)	de novo biosynthesis of purine nucleotides(deoxy-GTP)
-	IMP --> deoxy-ATP, IMP --> deoxy-GTP は描いていない
+	IMP --> deoxy-ATP, IMP --> deoxy-GTP は別ページ
 ! de novo biosynthesis of pyrimidine deoxyribonucleotides
-	dUTPから
+	UDPからdUTPを追加
-	CDP or dCMP --> dUTP, UDP or dUMP --> dUTP は描いていない
+	CDP or dCMP --> dUTP は描いていない
 de novo biosynthesis of pyrimidine ribonucleotides
@@ Line 135: / Line 141: @@
 ! hexaprenyl diphosphate biosynthesis
 	Geranylgeranyl diphosphate まで
 histidine biosynthesis