http://metabolomics.jp/mediawiki/index.php?action=history&feed=atom&title=MediaWiki%3AJBrowse.js 2026-05-16T03:20:02Z Revision history for this page on the wiki MediaWiki 1.19.1 http://metabolomics.jp/mediawiki/index.php?title=MediaWiki:JBrowse.js&diff=314637&oldid=prev 2014-12-31T05:22:10Z

<p>Created page with &quot;var baseUrl = &quot;/JBrowse/&quot;; // 最初にdojo.jsを属性付きで読み込む var dojoScript = document.createElement(&#039;script&#039;); dojoScript.type = &#039;text/javascript&#039;; dojoScri...&quot;</p> <p><b>New page</b></p><div>var baseUrl = &quot;/JBrowse/&quot;;<br /> <br /> // 最初にdojo.jsを属性付きで読み込む<br /> var dojoScript = document.createElement('script');<br /> dojoScript.type = 'text/javascript';<br /> dojoScript.src = baseUrl+'/src/dojo/dojo.js'<br /> dojoScript.setAttribute(&quot;data-dojo-config&quot;, &quot;async: 1, baseUrl: baseUrl+'src'&quot;);<br /> var css = document.getElementsByTagName( 'link' )[0];<br /> css.parentNode.appendChild(dojoScript, css);<br /> <br /> // dojo.jsの読み込み完了後、init.jsを読み込む<br /> dojoScript.onload = function(){<br /> var initScript = document.createElement('script');<br /> initScript.type = 'text/javascript';<br /> initScript.src = baseUrl+'/src/JBrowse/init.js';<br /> dojoScript.parentNode.appendChild(initScript, dojoScript);<br /> <br /> <br /> // init.jsの読み込み完了後、初期化を行う<br /> initScript.onload = function(){<br /> window.onerror=function(msg){<br /> if( document.body )<br /> document.body.setAttribute(&quot;JSError&quot;,msg);<br /> }<br /> <br /> // puts the main Browser object in this for convenience. feel<br /> // free to move it into function scope if you want to keep it<br /> // out of the global namespace<br /> var JBrowse;<br /> require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ],<br /> function (Browser,ioQuery,JSON) {<br /> // the initial configuration of this JBrowse<br /> // instance<br /> <br /> // NOTE: this initial config is the same as any<br /> // other JBrowse config in any other file. this<br /> // one just sets defaults from URL query params.<br /> // If you are embedding JBrowse in some other app,<br /> // you might as well just set this initial config<br /> // to something like { include: '../my/dynamic/conf.json' },<br /> // or you could put the entire<br /> // dynamically-generated JBrowse config here.<br /> <br /> // parse the query vars in the page URL<br /> var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );<br /> <br /> var config = {<br /> containerID: &quot;GenomeBrowser&quot;,<br /> sourceUrl: baseUrl,<br /> browserRoot: baseUrl, <br /> dataRoot: baseUrl + &quot;data/{{{1}}}&quot;,<br /> queryParams: queryParams,<br /> location: queryParams.loc,<br /> forceTracks: &quot;DNA,BAM SNPs/Coverage,BAM&quot;,<br /> initialHighlight: queryParams.highlight,<br /> show_nav: queryParams.nav,<br /> show_tracklist: queryParams.tracklist,<br /> show_overview: queryParams.overview,<br /> stores: { url: { type: &quot;JBrowse/Store/SeqFeature/FromConfig&quot;, features: [] } },<br /> makeFullViewURL: function( browser ) {<br /> <br /> // the URL for the 'Full view' link<br /> // in embedded mode should be the current<br /> // view URL, except with 'nav', 'tracklist',<br /> // and 'overview' parameters forced to 1.<br /> <br /> return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });<br /> },<br /> updateBrowserURL: true<br /> };<br /> <br /> //if there is ?addFeatures in the query params,<br /> //define a store for data from the URL<br /> if( queryParams.addFeatures ) {<br /> config.stores.url.features = JSON.parse( queryParams.addFeatures );<br /> }<br /> <br /> // if there is ?addTracks in the query params, add<br /> // those track configurations to our initial<br /> // configuration<br /> if( queryParams.addTracks ) {<br /> config.tracks = JSON.parse( queryParams.addTracks );<br /> }<br /> <br /> // if there is ?addStores in the query params, add<br /> // those store configurations to our initial<br /> // configuration<br /> if( queryParams.addStores ) {<br /> config.stores = JSON.parse( queryParams.addStores );<br /> }<br /> // create a JBrowse global variable holding the JBrowse instance<br /> JBrowse = new Browser( config );<br /> });<br /> }<br /> }</div>

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