View source for Category:PK/iTypeI

==Iterative Type I PKS Class==

{|
|+ '''The Phylogeny of Ketosynthase Domain of 470 Iterative Type I PKS Genes'''
|-
| Phylogenetic inference was obtained with maximum-parsimony (MP) algorithms with a bootstrap test (1000 pseudo-replicates) in the MEGA package. Consensus sequences are available [[:Category:PK/iTypeI/KS|here]].
| [[Image:PK-Class-IterativeTypeI.jpg]]
|}

{| class="wikitable"
! Category
! Class
! Gene IDs
{{#repeat:PK/Class/Table/Row|1|
FAS 1 && 01.FAS && FAS_01 FAS_02 FAS_03 FAS_04 FAS_05 FAS_06 FAS_07 FAS_08 FAS_09 FAS_10
Bacterial 7&& 02.NRPS-PKS(NFC) && An14g04850 Bact04 Bact16 Bact18 Fung034 Fung097
&& 03a_bPR-PKS && Bact03 Bact05 Bact43
&& 03b_bMSAS && Bact06 Bact14 Bact17 Bact20 Bact36 Bact42 Bact44
&& 04.6-MSAS(NFC) && ACLA_093660 AFLA_114820 An10g00140 AO090206000074 APar01 Aspe03 ATEG_06275 ATer01 Bact35 Bact37 Bact52 Bact58 Fung002 Fung006 Fung013 Fung035 Fung056 Fung076 Fung087
&& 05.Mycobacterium_2 && Bact23 Bact28 Bact29 Bact31 Bact34 Bact38 Bact39 Bact40 Bact51 Bact55 Bact56 Bact57
&& 06.Mycobacterium_3 && Bact01 Bact02 Bact24 Bact25 Bact26 Bact27 Bact32 Bact33 Bact41 Bact53 Bact54 Bact59
&& 07.Bacterial_PKS_mixed_species && Bact07 Bact08 Bact09 Bact10 Bact11 Bact12 Bact13 Bact19 Bact21 Bact22 Bact30 Bact45 Bact46 Bact47 Bact48 Bact49 Bact50 Bact60 Bact61 Bact62 Bact63 Bact64 Bact65 Bact66 Bact67
NR-PKS 18&& 08.NRPKS_I_(1)_OAS-Like && ANIA_07909 Fung020 Fung059 Fung065 Fung066 Fung068 Fung082 Fung099 Fung112 Fung115 Fung119 Fung127 Fung129 Fung131
&& 09.NRPKS_I(2) && ACLA_043310 AFLA_108550 AFUA_4G00210 AFUA_4G14560 AFUB_071800 AFUB_100730 An04g09530 ANIA_00150 AO090023000444 ATEG_02434 ATEG_08451 ATer06 Fung019 Fung029 Fung107 Fung110 Fung113 Fung118 Fung123 Fung124 NFIA_045430 NFIA_101660 NFIA_101810
&& 10.NRPKS_I(3) && AFLA_060020 AFUA_7G00160 AFUB_086700 An11g07310 ANIA_06000 ANIA_07071 AO090701000530 Fung030 Fung088 Fung089 Fung134 NFIA_112240
&& 11.NRPKS_I(4a)melanin && Fung003 Fung004 Fung007 Fung008 Fung010 Fung011 Fung017 Fung018 Fung060 Fung063 Fung067 Fung069 Fung070 Fung079 Fung081 Fung095 Fung096 Fung101 Fung102 Fung108 Fung117 Fung130 Fung132
&& 11.NRPKS_I(4b)melanin && Fung028 Fung061 Fung064 Fung073 Fung106 Fung111
&& 12.NRPKS_I(5) && ATEG_00145 ATer04
&& 13.NRPKS_I(6) && Fung009 Fung120 Fung126
&& 14.NRPKS_I(7)Pigment-1 && ACLA_076490 AFLA_006170 AFUA_2G17600 AFUB_033290 AFum01 AFum02 AFum03 AFum04 AFum05 AFum06 AFum07 An09g05730 ANIA_08209 ANid02 AO090102000545 Fung083 Fung116 Fung122 NFIA_093000
&& 15.NRPKS_I(8)Pigment-2 && AFLA_116220 An03g05440 AO090010000048 ATEG_07500 ATer05 Fung039 Fung051 Fung054 Fung077 Fung090 Fung094 Fung104 Fung114 Fung121
&& 16.NRPKS_I(9) && AFLA_139410 AFla01 AFla02 AFla03 AN7825 ANid01 AO090026000009 AOry01 APar02 APar03 Aspe01 Aspe02 Aspe04 Fung052 Fung057 Fung092 Fung100 Fung109 StcA
&& 17.NRPKS_I(10) && AFLA_082150 AO090005000961 ATEG_06206 Fung038 Fung053 Fung078 Fung091 Fung093 Fung103 Fung105 Fung125
&& 18.NRPKS_II && AFLA_112840 AFUB_079710 AO090023000877 ATEG_07379
&& 19.NRPKS_III(1) && Fung021 Fung032 Fung033
&& 20.NRPKS_III(2) && ACLA_008090 AFLA_127090 AFUA_3G02570 AFum08 An09g01860 ANIA_00523 AO090001000402 ATEG_03432 Fung022 Fung062 Fung074 Fung133 NFIA_003740
&& 21.NRPKS_III(3) && AFLA_116890 An12g02050 ANIA_03386 AO090010000114 ATEG_08662
&& 22.NRPKS_III(4) && AFLA_062860 AFLA_118960 An03g01820 ANIA_01034 ANIA_02032 ANIA_03230 AO090010000404 AO090701000831 ATEG_07661 Fung031 Fung098
&& 23.NRPKS_III(5) && An09g02100 AO090009000131 Fung024
&& 24.NRPKS_III(6) && ACLA_061390 AFUA_8G02350 AFUB_084240 ANIA_06448 ANIA_08383 ATEG_03629 ATEG_10080 Fung023 NFIA_096030
R-PKS 2&& 25.R-PKS_I(1) && ACLA_043440 ACLA_055790 AFLA_053870 AFLA_080490 AFLA_105450 AFLA_118940 AFLA_126710 AFUA_1G01010 AFUA_3G14700 AFUB_034520 AFUB_045640 An01g06930 An02g09430 An03g06380 An07g01030 An09g01290 An09g05340 An11g05570 An12g02670 ANIA_03612 ANIA_06431 ANIA_08910 ANIA_09005 AO090005000798 AO090009000071 AO090010000402 AO090038000210 ATEG_06680 ATEG_08172 ATEG_09100 Fung005 Fung027 Fung046 Fung047 NFIA_004080 NFIA_057360 NFIA_062550
&& 26.R-PKS_I(2) && AFLA_137870 AFUA_8G00370 AFUB_086200 An01g01130 An01g06950 An15g05090 ANIA_07084 AO090011000015 AO090026000149 ATEG_01894 ATEG_04718 ATEG_06056 Fung048 Fung049 Fung050 Fung084 NFIA_023490 NFIA_093790 NFIA_093910
6-MSAS/NRPS-PKS 8&& 27.6-MSAS_I && ACLA_042410 AFLA_002900 AFUA_6G13930 AFUB_000820 An04g04340 An11g09720 ANIA_01784 AO090102000166 ATEG_09617 NFIA_100520
&& 28.NRPS-PKS_I && AFLA_010000 AO090103000224
&& 29.NRPS-PKS_II && ACLA_077660 An08g03790 An13g02960
&& 30.NRPS-PKS_III(Equisetin-like) && ACLA_023380 AFLA_066980 An14g01910 AO090001000293 Fung036 Fung043 Fung044 Fung055
&& 31.6-MSAS_II_(lovastatin-like) && ACLA_055680 ATEG_09961 ATer03 Fung045 Fung071 LovB
&& 32.NRPS-PKS_IV && ACLA_078660 ACLA_098920 AFUA_1G17740 AFUB_045790
&& 33.NRPS-PKS_V && ACLA_004770 AFLA_066840 AFLA_139490 AFUA_8G00540 AFUB_086030 An02g08290 An11g06460 ANIA_08412 AO090001000277 AOry02 ATEG_00325 CpaA Fung015 Fung080 Fung086 NFIA_001530 PsoA
&& 34.NRPS-PKS_VI && AFLA_096770 An11g00250 An18g00520 AO090113000209 ATEG_00282
R-PKS 9&& 35.R-PKS_II && AN3610.2 ANIA_10430
&& 36.R-PKS_III && An12g07070 An13g02430 AO090020000186 ATEG_07067 Fung016 Fung025 Fung058 Fung128
&& 37.R-PKS_IV && ACLA_063030 AFLA_054090 AFUA_3G01410 AFUB_046990 AO090009000052 ATEG_09088 Fung001 NFIA_002360
&& 38.R-PKS_V && ACLA_061310 ACLA_063870 AFLA_062820 An09g01930 ANIA_01036 ANIA_02035 ANIA_06791 AO090701000826 ATEG_07659 ATEG_09968 ATer02 Fung012 Fung042 Fung072 Fung085
&& 39.R-PKS_VI && ACLA_087700 ACLA_094600 AFLA_005320 AFLA_128060 AFUA_2G01290 AFUB_018370 An02g00450 An03g05140 An04g10030 An11g03920 An15g02130 An15g04140 AO090001000506 AO090038000086 Fung014 Fung037 Fung040 NFIA_033590
&& 40.R-PKS_VII && ACLA_002670 An11g05960 An15g07920 Aspe05 ATEG_03446 ATEG_07279
&& 41.R-PKS_VIII && An11g05940 ATEG_07282 Fung041
&& 42.R-PKS_IX && ACLA_098370 Fung026 Fung075
&& 43.R-PKS_X && An11g04280 An12g02730 AN9217.2 ANIA_02547 ANIA_07838 ANIA_11191
}}
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