Category:TP3
m (→Biosynthesis) |
(→Biosynthesis) |
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{{Twocolumn| | {{Twocolumn| | ||
The starting point is squalene, which is formed by joining two FPPs tail-to-tail. | The starting point is squalene, which is formed by joining two FPPs tail-to-tail. | ||
− | Bacterial cyclases use squalene directly, but those of the other species use | + | Bacterial cyclases use squalene directly<ref>Bacterial squalene cyclases can accept oxidosqualene as their substrates, but oxidosqualene usually does not exist in bacteria</ref>, but those of the other species use |
2,3-oxidosqualene for cyclization. | 2,3-oxidosqualene for cyclization. | ||
− | * In bacteria, squalene is cyclized via the 17α-deoxydammarenyl cation to hopene and other triterpenes | + | * In bacteria, squalene is cyclized via the 17α-deoxydammarenyl cation to hopene and other triterpenes. |
− | * In eukaryotes, 2,3-oxidosqualene is cyclized via the protosteryl cation to lanosterol (animals and fungi) or cycloartenol (plants) by a series of 1,2-hydride and methyl shifts (Wagner-Meerwein shifts).<ref> | + | * In eukaryotes, 2,3-oxidosqualene is cyclized via the protosteryl cation to lanosterol (animals and fungi) or cycloartenol (plants) by a series of 1,2-hydride and methyl shifts (Wagner-Meerwein shifts).<ref>In plants, a trace amount of phytosterols comes from lanosterol.<br/>''Ref.'' Ohyama K, Suzuki M, Kikuchi J, Saito K, Muranaka T (2009) Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis ''Proc Natl Acad Sci USA'' 106(3):725-730</ref> |
− | * In plants, various triterpenes arise from the dammarenyl cation. | + | * In plants, various triterpenes arise from the 17β-dammarenyl cation. |
| | | | ||
始まりとなる物質はスクアレンで、二分子のファルネシル二リン酸が末尾どうしで結合して作られます。バクテリアの環化酵素はスクアレンをそのまま利用しますが<ref>バクテリアのスクアレン環化酵素はオキシドスクアレンも基質として利用できますが、バクテリアはオキシドスクアレンを合成しません。</ref>、それ以外の生物種では2,3-オキシドスクアレンを利用します。 | 始まりとなる物質はスクアレンで、二分子のファルネシル二リン酸が末尾どうしで結合して作られます。バクテリアの環化酵素はスクアレンをそのまま利用しますが<ref>バクテリアのスクアレン環化酵素はオキシドスクアレンも基質として利用できますが、バクテリアはオキシドスクアレンを合成しません。</ref>、それ以外の生物種では2,3-オキシドスクアレンを利用します。 | ||
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* 更に植物の場合、17β-ダンマラン型のカチオンから様々なトリテルペンが生成されます。 | * 更に植物の場合、17β-ダンマラン型のカチオンから様々なトリテルペンが生成されます。 | ||
}} | }} | ||
+ | |||
+ | ===={{Bilingual|Eukaryotes|真核生物}}==== | ||
+ | {| | ||
+ | |- | ||
+ | ! ({{Bilingual|Backbone Color Code: |骨格色分け: }} | ||
+ | ! style="background-color:#fdd"| Animals, fungi, and yeast | ||
+ | ! style="background-color:#dfd"| Plants only | ||
+ | ! ) | ||
+ | |} | ||
<center> | <center> | ||
{|style="text-align:center" | {|style="text-align:center" | ||
− | |||
− | |||
|- | |- | ||
|colspan="7"| 2,3-oxidosqualene | |colspan="7"| 2,3-oxidosqualene | ||
Line 74: | Line 81: | ||
|colspan="7"|[[Image:2,3-oxidosqualene.png]] | |colspan="7"|[[Image:2,3-oxidosqualene.png]] | ||
|- | |- | ||
− | |colspan="2" align="right"| lanosterol | + | |colspan="2" align="right"| |
+ | {| | ||
+ | |lanosterol<br/>syntase<ref>Lanosterol synthase is the most accessible enzyme among oxidosqualene cyclases.<br/>''Ref.'' Corey EJ, Russey WE, Ortiz-de-Montellano PR (1966) 2,3-Oxidosqualene, an intermediate in the biological synthesis of sterols from squalene ''J Am Chem Soc'' 88:4750-1 </ref> | ||
+ | |[[Image:Arrow00dl35.png]] | ||
+ | |stepwise<br/>cyclization<ref>The cyclization process is stepwise, not concerted as previously thought. As one clue, squalene is not fully folded in the cyclase active site.<br/>''Ref.'' Reinert DJ, Balliano G, Schulz GE (2004) Conversion of squalene to the pentacarbocyclic hopene. ''Chem Biol'' 11:121-6</ref> | ||
+ | |} | ||
|colspan="2"| | |colspan="2"| | ||
− | |align="left"| lupeol [[Image:Arrow00dr35.png]] | + | |align="left"| |
+ | {| | ||
+ | |lupeol<br/>synthase | ||
+ | |[[Image:Arrow00dr35.png]] | ||
+ | |stepwise<br/>cyclization | ||
+ | |} | ||
|- | |- | ||
− | | 17β-protosteryl cation <small>(C-B-C)</small><ref> | + | | 17β-protosteryl cation <small>(C-B-C)</small><ref>The C-17 chain of rotosteryl cation is β-configuration, not α.<br/> ''Ref.'' Corey EJ, Virgil SC (1991) An experimental demonstration of the stereochemistry of enzymic cyclization of 2,3-oxidosqualene to the protosterol system, forerunner of lanosterol and cholesterol. [http://pubs.acs.org/doi/abs/10.1021/ja00010a073 ''J Am Chem Soc'' 113:4025-6]</ref> <br/>[[Image:Protosteryl cation.png]] |
− | ''Ref.'' Corey EJ, Virgil SC (1991) An experimental demonstration of the stereochemistry of enzymic cyclization of 2,3-oxidosqualene to the protosterol system, forerunner of lanosterol and cholesterol. [http://pubs.acs.org/doi/abs/10.1021/ja00010a073 ''J Am Chem Soc'' 113:4025-6]</ref> | + | | 1,2-shift<br/>[[Image:Arrow00r.png]] |
− | <br/>[[Image:Protosteryl cation.png]] | + | |
− | | 1,2-shift<br/>[[Image: | + | |
| colspan="2"|lanosteryl cation <small>(C-C-C)</small><br/>[[Image:Lanosteryl cation.png]] | | colspan="2"|lanosteryl cation <small>(C-C-C)</small><br/>[[Image:Lanosteryl cation.png]] | ||
− | | 17β-dammarenyl cation <small>(C-C-C)</small><ref> | + | | 17β-dammarenyl cation <small>(C-C-C)</small><ref>The C-17 chain of dammarenyl cation is β-configuration.<br/> ''Ref.'' Xiong Q, Rocco F, Wilson WK, Xu R, Ceruti M, Matsuda SPT (2005) Structure and reactivity of the dammarenyl cation: configuration transmission in triterpene synthesis. ''J Org. Chem. 70:5362-75</ref> <br/>[[Image:Dammarenyl cation.png]] |
− | ''Ref.'' Xiong Q, Rocco F, Wilson WK, Xu R, Ceruti M, Matsuda SPT (2005) Structure and reactivity of the dammarenyl cation: configuration transmission in triterpene synthesis. ''J Org. Chem. 70:5362-75</ref> | + | |
− | <br/>[[Image:Dammarenyl cation.png]] | + | |
|- | |- | ||
|colspan="2"| | |colspan="2"| | ||
{| | {| | ||
+ | | | ||
+ | {| | ||
+ | |- | ||
|D-ring<br/>expansion | |D-ring<br/>expansion | ||
|[[Image:Arrow00d.png]] | |[[Image:Arrow00d.png]] | ||
− | | | + | |} |
− | | [[Image:Arrow00dr35.png]]protostane | + | | |
+ | {| | ||
+ | | [[Image:Arrow00dr35.png]] | ||
+ | | fungus<br/>only<ref>Oxygenated protostane are known in ''Cephalosporium caerulens'', ''Fusidium coccineum'', and ''Aspergillus fumigatus'' (Ascomycota). <br/>''Ref.'' Hattori H, Igarashi H, Iwasaki S, Okuda S, (1969) Isolation of 3bhydroxy- 4b-methylfusida-17(20)[16,21-cis],24 diene (3b-hydroxyprotosta- | ||
+ | 17(20)[16,21-cis],24 diene) and a related triterpene alcohol ''Tetrahedron Lett'' 13, 1023–1026<br/>Tiwari KP, Choudhary RN (1981) Chemical examination of ''Wisteria sinensis'' ''Proc Natl Acad Sci India A'' 51, 263–271</ref> | ||
+ | |- | ||
+ | | | ||
+ | |style="background-color:#fdd" align="right"| protostane | ||
+ | |} | ||
|} | |} | ||
| colspan="2"| | | colspan="2"| | ||
{| | {| | ||
− | |[[Image:Arrow00d.png]] | + | |1,2-shifts [[Image:Arrow00d.png]] all eukaryotes |
|} | |} | ||
| | | | ||
{| | {| | ||
+ | |- | ||
| D-ring<br/>expansion | | D-ring<br/>expansion | ||
|[[Image:Arrow00d.png]] | |[[Image:Arrow00d.png]] | ||
+ | | [[Image:Arrow00dr35.png]]<br/><br/> | ||
+ | |style="background-color:#dfd" align="center"| dammarane<br/>euphane<br/>tirucalane etc.<ref>Dammarane derivatives are unusually prevalent in the genus [[Species:Euphorbia|Euphorbia]].</ref> | ||
|} | |} | ||
| | | | ||
|- valign="top" | |- valign="top" | ||
− | | | + | |colspan="2"| cation with the chain at C18 or C17 position<br/>[[Image:CBCC cation.png]]or [[Image:CBCC cation2.png]] |
− | + | ||
| | | | ||
{| | {| | ||
− | |style="background-color:#fdd"| lanostane<br/>cycloartane<br/>cucurbitane<br/> | + | |style="background-color:#fdd"| all steroids<br/>lanostane<br/>cycloartane<br/>cucurbitane<br/>ergostane etc. |
|} | |} | ||
|align="right"| | |align="right"| | ||
{| | {| | ||
− | | <br/><br/><br/> | + | |<br/><br/><br/> |
− | | <br/> | + | |- |
+ | |style="background-color:#dfd"| baccharane<br/>shionane | ||
+ | | [[Image:Arrow00l35.png]] | ||
|} | |} | ||
| baccarenyl cation <small>(C-C-C-C)</small><br/>[[Image:Baccarenyl cation.png]] | | baccarenyl cation <small>(C-C-C-C)</small><br/>[[Image:Baccarenyl cation.png]] | ||
|- | |- | ||
− | | | + | | |
+ | {| | ||
+ | | E-ring<br/>cyclization<br/>(from 17β) | ||
+ | | [[Image:Arrow00d.png]] | ||
+ | |} | ||
+ | | | ||
{| | {| | ||
| E-ring<br/>cyclization<br/>(from 18α) | | E-ring<br/>cyclization<br/>(from 18α) | ||
| [[Image:Arrow00d.png]] | | [[Image:Arrow00d.png]] | ||
− | |||
− | |||
− | |||
|} | |} | ||
| | | | ||
|align="right"| | |align="right"| | ||
{| | {| | ||
− | | E-ring cyclization<br/>(from | + | | E-ring cyclization<br/>(from 17α/β) |
| [[Image:Arrow00dl.png]] | | [[Image:Arrow00dl.png]] | ||
|} | |} | ||
|colspan="2"| | |colspan="2"| | ||
{| | {| | ||
− | |E-ring<br/>& | + | |E-ring cyclization<br/>(from 18α/β) |
|[[Image:Arrow00d.png]] | |[[Image:Arrow00d.png]] | ||
− | |||
|} | |} | ||
|- valign="top" | |- valign="top" | ||
− | | | + | | arborinyl cation <small>(C-B-C-C)</small><br/>[[Image:Arborinyl cation.png]] |
− | | colspan="2" align="left"| | + | | colspan="2" align="left"| unnamed cation <small>(C-B-C-C)</small><br/>[[Image:Hanco cation.png]] |
− | | | + | | 21α-hopyl cation <small>(C-C-C-C)</small><br/>21β-moretyl cation <small>(C-C-C-C)</small><ref>The 21''R'' stereocenter is usually lost in hydride shift.</ref><br/>[[Image:Hopyl cation.png]] |
− | | H18α-lupyl cation <small>(C-C-C-C)</small><br/>[[Image:Lupyl cation.png]] | + | | H18α-lupyl cation <small>(C-C-C-C)</small><br/>H18β-lupyl cation <small>(C-C-C-B)</small><br/>[[Image:Lupyl cation.png]] |
|- | |- | ||
− | |align=" | + | |align="left"| |
− | | | + | {| |
+ | |1,2-shifts | ||
+ | |[[Image:Arrow00d35.png]] | ||
+ | |E-ring expansion | ||
+ | |} | ||
| | | | ||
− | | | + | {| |
− | | | + | |1,2-shifts |
− | |- | + | |[[Image:Arrow00d35.png]] |
− | | | + | |E-ring expansion |
+ | |} | ||
| | | | ||
| | | | ||
+ | {| | ||
+ | |1,2-shifts | ||
+ | |[[Image:Arrow00d35.png]] | ||
+ | |E-ring expansion | ||
+ | |} | ||
| | | | ||
+ | {| | ||
+ | |1,2-shifts | ||
+ | |[[Image:Arrow00d35.png]] | ||
+ | |E-ring expansion | ||
+ | |} | ||
+ | |- | ||
+ | |style="background-color:#dfd"| arborinane (C-B-C-C)<br/>stictane (C-B-C-C-C)<ref>C-B-C-C-C rings are very rare and stictanediol from Ascomycota [[Species:Sticta|''Sticta'']] genus is the sole example.<br/>''Ref.'' Chin WJ, Corbett RE, Heng CK, Wilkins AL (1973) Lichens and fungi. XI. Isolation and structural elucidation of a new group of triterpenes from ''Sticta coronata, S. colensoi'', and ''S. flavicans''. ''J Chem Soc Perkin Trans'' 1:1437–46</ref> | ||
+ | |style="background-color:#dfd"| hancokinane (C-B-C-C) | ||
| | | | ||
+ | |style="background-color:#dfd" align="left"| hopane (C-C-C-C)<br/> gammacerane (C-C-C-C-C)<br/> fernane (C-C-C-C)<br/> swertane (C-C-C-C-C)<br/> | ||
+ | |style="background-color:#dfd" align="left"| oleanane (C-C-C-C-C)<br/> lupane (C-C-C-C)<br/> germanicane<br/> taraxastane (C-C-C-C-C)<br/> ursane (C-C-C-C-C/B)<br/> friedomadeirane (C-C-C-C)<ref>E-ring cyclization precedes D-ring expansion.</ref><br/> | ||
|} | |} | ||
Line 165: | Line 214: | ||
* Xu R, Fazio GC, Matsuda SPT (2004) On the origins of triterpenoid skeletal diversity. ''Phytochemstry'' 65:261-291 PMID 14751299 | * Xu R, Fazio GC, Matsuda SPT (2004) On the origins of triterpenoid skeletal diversity. ''Phytochemstry'' 65:261-291 PMID 14751299 | ||
+ | ===={{Bilingual|Bacteria|微生物}}==== | ||
{| style="text-align:center" | {| style="text-align:center" | ||
|- | |- | ||
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| [[Image:Arrow00r.png]] | | [[Image:Arrow00r.png]] | ||
|- | |- | ||
− | | squalene-hopene [[Image:Arrow00d35.png]] cyclase<ref> | + | | squalene-hopene [[Image:Arrow00d35.png]] cyclase<ref>SH cyclase is the most accessible enzyme among squalene cyclases. <br/>''Ref.'' Kannenberg EL, Poralla K (1999) Hopanoid biosyntehsis and function in bacteria. ''Naturwissenschaften'' 86:168-76.</ref> |
| | | | ||
|- | |- |
Revision as of 17:57, 9 August 2010
Contents |
Triterpene (C30) Classes
Ring configuration
The basic structure is 4 carbon rings, cyclopenta[a]phenanthrene, gonane, or sterane. The rings B/C are always trans in all natural steroids. If the rings C/D are trans, it is called gonane. If its stereochemistry is unspecified, it is called sterane. Most steroids take gonane form, but in cardenolides and bufanolides, the rings C/D are cis.
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Cyclopenta[a]phenanthrene | Gonane |
The majority of steroids have methyl groups sticking out from the bridgehead positions C-10 and C-13. When these methyl groups (or hydrogens) stand above the plane, they are called β-configuration. Those below the plane are called α-configuration. If the configuration at any site is unknown, it is indicated as ξ (Greek Xi). By default, hydrogen atoms or substituents at the positions C-8, 9, 10, 13, and 14 are assumed to be 8β, 9α, 10β, 13β, and 14α configurations. C-5 is a special position, because there are as many 5α steroids as 5β are.
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cholestane backbone | 5α-configuration | 5β-configuration |
Biosynthesis
The starting point is squalene, which is formed by joining two FPPs tail-to-tail. Bacterial cyclases use squalene directly[1], but those of the other species use 2,3-oxidosqualene for cyclization.
- In bacteria, squalene is cyclized via the 17α-deoxydammarenyl cation to hopene and other triterpenes.
- In eukaryotes, 2,3-oxidosqualene is cyclized via the protosteryl cation to lanosterol (animals and fungi) or cycloartenol (plants) by a series of 1,2-hydride and methyl shifts (Wagner-Meerwein shifts).[2]
- In plants, various triterpenes arise from the 17β-dammarenyl cation.
真核生物
(骨格色分け: | Animals, fungi, and yeast | Plants only | ) |
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2,3-oxidosqualene | ||||||||||||||||||
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17β-protosteryl cation (C-B-C)[5] ![]() |
1,2-shift![]() |
lanosteryl cation (C-C-C)![]() |
17β-dammarenyl cation (C-C-C)[6] ![]() | |||||||||||||||
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cation with the chain at C18 or C17 position![]() ![]() |
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baccarenyl cation (C-C-C-C)![]() | |||||||||||||||
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arborinyl cation (C-B-C-C)![]() |
unnamed cation (C-B-C-C)![]() |
21α-hopyl cation (C-C-C-C) 21β-moretyl cation (C-C-C-C)[9] ![]() |
H18α-lupyl cation (C-C-C-C) H18β-lupyl cation (C-C-C-B) ![]() | |||||||||||||||
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arborinane (C-B-C-C) stictane (C-B-C-C-C)[10] |
hancokinane (C-B-C-C) | hopane (C-C-C-C) gammacerane (C-C-C-C-C) fernane (C-C-C-C) swertane (C-C-C-C-C) |
oleanane (C-C-C-C-C) lupane (C-C-C-C) germanicane taraxastane (C-C-C-C-C) ursane (C-C-C-C-C/B) friedomadeirane (C-C-C-C)[11] |
- ↑ Bacterial squalene cyclases can accept oxidosqualene as their substrates, but oxidosqualene usually does not exist in bacteria
- ↑ In plants, a trace amount of phytosterols comes from lanosterol.
Ref. Ohyama K, Suzuki M, Kikuchi J, Saito K, Muranaka T (2009) Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis Proc Natl Acad Sci USA 106(3):725-730 - ↑ Lanosterol synthase is the most accessible enzyme among oxidosqualene cyclases.
Ref. Corey EJ, Russey WE, Ortiz-de-Montellano PR (1966) 2,3-Oxidosqualene, an intermediate in the biological synthesis of sterols from squalene J Am Chem Soc 88:4750-1 - ↑ The cyclization process is stepwise, not concerted as previously thought. As one clue, squalene is not fully folded in the cyclase active site.
Ref. Reinert DJ, Balliano G, Schulz GE (2004) Conversion of squalene to the pentacarbocyclic hopene. Chem Biol 11:121-6 - ↑ The C-17 chain of rotosteryl cation is β-configuration, not α.
Ref. Corey EJ, Virgil SC (1991) An experimental demonstration of the stereochemistry of enzymic cyclization of 2,3-oxidosqualene to the protosterol system, forerunner of lanosterol and cholesterol. J Am Chem Soc 113:4025-6 - ↑ The C-17 chain of dammarenyl cation is β-configuration.
Ref. Xiong Q, Rocco F, Wilson WK, Xu R, Ceruti M, Matsuda SPT (2005) Structure and reactivity of the dammarenyl cation: configuration transmission in triterpene synthesis. J Org. Chem. 70:5362-75 - ↑ Oxygenated protostane are known in Cephalosporium caerulens, Fusidium coccineum, and Aspergillus fumigatus (Ascomycota).
Ref. Hattori H, Igarashi H, Iwasaki S, Okuda S, (1969) Isolation of 3bhydroxy- 4b-methylfusida-17(20)[16,21-cis],24 diene (3b-hydroxyprotosta- 17(20)[16,21-cis],24 diene) and a related triterpene alcohol Tetrahedron Lett 13, 1023–1026
Tiwari KP, Choudhary RN (1981) Chemical examination of Wisteria sinensis Proc Natl Acad Sci India A 51, 263–271 - ↑ Dammarane derivatives are unusually prevalent in the genus Euphorbia.
- ↑ The 21R stereocenter is usually lost in hydride shift.
- ↑ C-B-C-C-C rings are very rare and stictanediol from Ascomycota Sticta genus is the sole example.
Ref. Chin WJ, Corbett RE, Heng CK, Wilkins AL (1973) Lichens and fungi. XI. Isolation and structural elucidation of a new group of triterpenes from Sticta coronata, S. colensoi, and S. flavicans. J Chem Soc Perkin Trans 1:1437–46 - ↑ E-ring cyclization precedes D-ring expansion.
Useful Reviews:
- Xu R, Fazio GC, Matsuda SPT (2004) On the origins of triterpenoid skeletal diversity. Phytochemstry 65:261-291 PMID 14751299
微生物
BACTERIA | |
squalene | |
![]() |
![]() |
squalene-hopene ![]() |
|
17α-deoxydammarenyl cation[2] | |
D-ring ![]() |
|
![]() |
|
![]() |
|
hopene![]() |
|
Examples. |
Design of Tri-terpene ID numbers ID番号の設計
12-DIGIT
T | P | 3 | x | y | y | r | h | g | n | c | c |
- x ... species information
Symbol at x | Kingdom | Phyla | Examples |
---|---|---|---|
I | Animalia | Arthropoda (Insects, crabs) | ecdysteroids |
V | Chordate (Vertebrates) | sex steroids, corticosteroids, anabolic steroids | |
O | Others | marine steroids | |
P | Plantae | Phytosterols | lanosterols, cholesterols, brassinolides |
S | Saponins | saponins | |
F | Fungi | ergosterols | ergosterols |
B | Bacteria | bacterial sterols | hopanoids |
- y ... backbone structure (母核構造)
- r ... number of major rings (環構造数)
Click above categories to see details.
- h ... hydroxylation pattern (水酸基数)
Click above categories to see details.
- g ... glycosylation pattern(糖修飾パターン)
Click above categories to see details.
- n ... number of sugars (修飾糖数)
Click above categories to see details.
- c ... serial number (通し番号)
Cite error:
<ref>
tags exist, but no <references/>
tag was found
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