PKS:Bact45
From Metabolomics.JP
(Difference between revisions)
| Line 7: | Line 7: | ||
|geneName= | |geneName= | ||
|MAPSI=ACP-KS-AT-ACP | |MAPSI=ACP-KS-AT-ACP | ||
| − | |CDD=(PP)-KS-AT-PP- | + | |CDD=(PP)-KS-AT-PP-QAT_like-C-HxxPF_rptA-PP |
| − | |class= | + | |class=NRPS-PKS |
|reliability= | |reliability= | ||
|description=amino acid adenylation domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] | |description=amino acid adenylation domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] | ||
| − | |information=PP | + | |information=A PP domain is in front of KS domain. Domain organization does not like PKS. |
|length=3099 | |length=3099 | ||
|references=\*Schmitt.+2009$ | |references=\*Schmitt.+2009$ | ||
}} | }} | ||
{{{{NAMESPACE}}/Footer}} | {{{{NAMESPACE}}/Footer}} | ||
Revision as of 13:31, 27 May 2012
| Polyketide Top | Species List | UniRef90 Class | UniRef50 Class | Gene Class | Domains (by CDD) |
Domains (by MAPSI) |
| Herpetosiphon aurantiacus ATCC 23779 (GenBank YP_001544628) all species | |||
|---|---|---|---|
| Class | NRPS-PKS (length: 3099) all classes Class 07.Bacterial_PKS_mixed_species in KS domain phylogeny | Reliability | |
| Product | GeneName | ||
| UniProt,UniRef90 | [1] , [2] | UniRef50 | [3] |
| Domain by MAPSI | ACP-KS-AT-ACP | ||
| Domain by CDD | (PP)-KS-AT-PP-QAT_like-C-HxxPF_rptA-PP | ||
| Domain by ITER-DB | {{{ITERDB}}} | ||
| Estimated Domain | |||
| Description | amino acid adenylation domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] | ||
| Information | A PP domain is in front of KS domain. Domain organization does not like PKS. | ||
| References |
| ||
| Link | AspGD | ||
This work is performed by ShuHsi Lin (TW), Toshitaka Kumagai and Masanori Arita (JP)
