BM All
From Metabolomics.JP
(Difference between revisions)
| (7 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
==Category description== | ==Category description== | ||
This page introduces a hierarchical classification of basic metabolites. | This page introduces a hierarchical classification of basic metabolites. | ||
| − | + | <br> | |
| + | Class Description | ||
{{ClassifiedTable|1= | {{ClassifiedTable|1= | ||
| − | + | BMIO && Inorganic Chemcals && Metals, Halogens, Nitrogen, Sulfur, Phosphorus compounds | |
| − | + | && BMAA && Amino acids && Basic amino acids(composing protein), their modified form(excluding carbon chain modification) and their isomeric form | |
| − | + | && BMAD && Amino acids derivatives && Amino acids(excluding basic a.a.), Basic a.a. with additional carbon chain and Peptides | |
| − | + | && BMFY && Fatty Acyl and Related Molecules && Carboxylic acid, Aldehyde, Alcohol, Amine, Phosphate, Sulfate and so on | |
| − | + | && BMMC && mono-cyclic or asssembled cyclic molecules && benzene, pyrimidine, pyridine, imidazole, thiazole, quinone, retinol, pyrrolidin, lacton, aliphatic cyclic, hetero cyclic, asembled | |
| − | && | + | && BMCC && conjugated cyclic molecules && purine, pteridine, porphyrin, indole, tocopherol, quinoline, naphthalen, condensed ring, bridged structure |
| − | + | && BMxx && others && other metabolite related molecules | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | && | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | && | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | && | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | && | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | && | + | |
}} | }} | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | + | Basic metabolites ID list | |
| − | *carboxylic acid | + | {{ClassifiedTable|1= |
| − | * | + | BMIO && BMIOOX && oxidized elements &&&& BMIOMT && metals and halogens (and other atomic elements) && |
| − | *semialdehyde( | + | && BMIONT && nitrogen compounds && |
| − | * | + | && BMIOPP && phosphates && |
| − | *amide | + | && BMIOSF && sulfates && |
| − | *amine | + | BMAA && BMAASn && straight-chain amino acids(with carbon chain length:n) && |
| − | * | + | && BMAABn && branched-chain amino acids(with carbon chain length:n) && |
| + | && BMAACC && cyclic and aromatic amino acids && | ||
| + | && BMAACCBZ && cyclic and aromatic amino acids with benzene ring && | ||
| + | && BMAACCID && cyclic and aromatic amino acids with indole ring && | ||
| + | && BMAACCPL && cyclic and aromatic amino acids with pyrrolidine ring && | ||
| + | && BMAACCIZ && cyclic and aromatic amino acids with imidazole ring && | ||
| + | BMAD && BMADSn && straight-chain amino acid derivatives(with carbon chain length:n) && | ||
| + | && BMADBn && branched-chain a.a. derivatives(with carbon chain length:n) && | ||
| + | && BMADCC && cyclic and aromatic a.a. derivatives && | ||
| + | && BMADCCBZ && a.a. derivatives with benzene ring && | ||
| + | && BMADCD && a.a. derivatives with indole ring && | ||
| + | && BMADCZ && a.a. derivatives with imidazole ring && | ||
| + | && BMADCX && a.a. derivatives with other cyclic molecules && | ||
| + | && BMADDP && dipeptide && | ||
| + | && BMADTP && tripeptide && | ||
| + | BMFY && BMFYSn && straight-chain molecules(with carbon chain length:n) && | ||
| + | && BMFYBn && branched-chain molecules(with carbon chain length:n) && | ||
| + | BMxx && other metabolite related molecules && | ||
| + | && BMxxSx && CO2, CH4 and so on && | ||
| + | && BMxxBx && Trimethyl-amine, Isobutyro-nitrile and so on && | ||
| + | BMMC && mono-cyclic or cyclic assembled molecules && | ||
| + | && BMMCBZ && with benzene ring && | ||
| + | && BMMCBZ && with benzene ring (Substituent = 0-1,2o,2m,2p,3,4-6) && | ||
| + | && BMMCPD && with pyridine ring (nicotinate, pyridoxal, ...) && | ||
| + | && BMMCPY && with pyrimidine ring (CXP, TXP, orotate ...) && | ||
| + | && BMMCPYCT && with Cytosine && | ||
| + | && BMMCPYTY && with Thymine && | ||
| + | && BMMCPYUR && with Uracil && | ||
| + | && BMMCPYXX && Others && | ||
| + | && BMMCIZ && with imidazole ring && | ||
| + | && BMMCTZ && with thiazole ring (thiamine) && | ||
| + | && BMMCVA && with retinol ring (vitamin A) && | ||
| + | && BMMCQN && with Quinone && | ||
| + | && BMMCPL && with Pyrrolidine && | ||
| + | && BMMCLA && with lacton && | ||
| + | && BMMCAC && alicyclic molecules && | ||
| + | && BMMCACCH && cyclohexan && | ||
| + | && BMMCACEN && cyclohexen && | ||
| + | && BMMCACDE && cyclohexadien && | ||
| + | && BMMCACxx && others && | ||
| + | && BMMCHE && hetero aromatic molecules && | ||
| + | && BMMCAS && assembled && | ||
| + | BMCC && conjugated cyclic molecules && | ||
| + | && BMCCPU && with purine ring (AXP, GXP, IXP, XXP, ...) && | ||
| + | && BMCCPUCA && with CoA && | ||
| + | && BMCCPUAD && with Adenine && | ||
| + | && BMCCPUGU && with Guanine && | ||
| + | && BMCCPUIN && with Inosine && | ||
| + | && BMCCPUXX && others(Xanthine) && | ||
| + | && BMCCPT && with pteridine ring (pterin, flavine ...) && | ||
| + | && BMCCPTFL && with Flavin && | ||
| + | && BMCCPTFO && with Folic acid && | ||
| + | && BMCCPTPD && with Pteridine && | ||
| + | && BMCCPTPT && with Pterine && | ||
| + | && BMCCPP && with porphyrin ring (V12, cobalamine, heme) && | ||
| + | && BMCCVE && with tocopherol ring (vitamin E) && | ||
| + | && BMCCID && with indole ring && | ||
| + | && BMCCQL && with quinoline && | ||
| + | && BMCCNP && with Naphthalen && | ||
| + | && BMCCCR && with condensed ring && | ||
| + | && BMCCBR && with bridged structure && | ||
| + | }} | ||
| + | |||
| + | functional group list | ||
| + | *CA carboxylic acid | ||
| + | *DA dicarboxylic acid | ||
| + | *SA semialdehyde | ||
| + | *AL aldehyde | ||
| + | *HO hydroxy | ||
| + | *OX oxo | ||
| + | *AM amide | ||
| + | *AN amine | ||
| + | *CN cyano, nitrile, nitro | ||
| + | *PH phosphate | ||
| + | *SF sulfur | ||
| + | *KT ketone | ||
| + | *CE CoA | ||
| + | *UM unmodified | ||
| + | *HL halogens | ||
| + | *MT metals | ||
| + | *ME methyl | ||
| + | *AK alkyl (-CH2-X) | ||
| + | *ES ester | ||
| + | *AM amide | ||
| + | *AN amine | ||
| + | *PH phosphate | ||
| + | *SF sulfur | ||
| + | *CP complexed | ||
| + | *CO carbonyl | ||
Latest revision as of 18:24, 30 April 2008
[edit] Category description
This page introduces a hierarchical classification of basic metabolites.
Class Description
| ID | Description | Note |
|---|
Basic metabolites ID list
functional group list
- CA carboxylic acid
- DA dicarboxylic acid
- SA semialdehyde
- AL aldehyde
- HO hydroxy
- OX oxo
- AM amide
- AN amine
- CN cyano, nitrile, nitro
- PH phosphate
- SF sulfur
- KT ketone
- CE CoA
- UM unmodified
- HL halogens
- MT metals
- ME methyl
- AK alkyl (-CH2-X)
- ES ester
- AM amide
- AN amine
- PH phosphate
- SF sulfur
- CP complexed
- CO carbonyl
