MediaWiki:LipoqualityChart.js
From Metabolomics.JP
(Difference between revisions)
(Created page with "// 定数 const DEFAULT_BAR_COLOR = "#7cb5ec"; const MARGIN = 30; var barColor = DEFAULT_BAR_COLOR; // バーチャート（バンドル）のX軸ラベル変更用 var leg...") |
Revision as of 13:54, 14 November 2017
// 定数
const DEFAULT_BAR_COLOR = "#7cb5ec";
const MARGIN = 30;
var barColor = DEFAULT_BAR_COLOR;
// バーチャート（バンドル）のX軸ラベル変更用
var legendOptions = ["Sample name","Sample source","Sample type","Tissue","Treatment","Extraction","LC type","MS type","Ion mode","Quantification"];
// グローバル変数
var gBarData;
var chart;
var piechart;
var defaultTickInterval = currentTickInterval = 5;
var gHeatmapData;
// 初期化 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function lipoqulityChartInit()
{
// insert "Reset zoom" button
var resetZoomButton = document.createElement("input");
resetZoomButton.setAttribute("type", "button");
resetZoomButton.value = "Reset zoom";
resetZoomButton.id = "resetZoomButton";
resetZoomButton.style.visibility = "hidden";
resetZoomButton.onclick = unzoomBarCharts;
document.getElementById("resetZoom").appendChild(resetZoomButton);
// ウィンドウサイズが変更されたら、チャートもリサイズする
$(window).resize(function() {
resizeChart();
});
}
// ウィンドウサイズが変更されたとき、チャートの幅も修正する ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function resizeChart()
{
if(chart == undefined || chart.length == 0)
return;
if(gChartType == "bar"){
// barchart & piechart
var height = 300;
var pieWidth = 400;
if(document.getElementById("pieContainer").style.display == "none")
pieWidth = 0;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - pieWidth - MARGIN;
if(width < 300)
width = 300;
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
for(var i = 0; i < piechart.length; i ++)
$("#pieContainer" + i).highcharts().setSize(pieWidth, height);
} else if(gChartType == "chain"){
// chain
var height = 500;
var width = $(window).width() - $("#mw-panel").width() - MARGIN;
$("#container0").highcharts().setSize(width, height);
} else {
// heatmap or barchart(bundle)
var height = 400;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - MARGIN;
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
}
}
// 指定されたIDを持つDOMの全子ノードを削除する
// param id - 対象ID
function removeAllChild(id)
{
var dom = document.getElementById(id);
for(var i = dom.childNodes.length-1; i >= 0; i --)
dom.removeChild(dom.childNodes[i]);
}
// チャート表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
// すべてのチャートの起点となる
function showChart(targets)
{
if(targets.length == 0)
return;
document.getElementById("resetZoomButton").style.visibility = "hidden";
document.getElementById("showButton").disabled = true;
document.getElementById("bar") .disabled = true;
document.getElementById("heatmap") .disabled = true;
document.getElementById("sortableList").style.display = "none";
// 以前の結果(ソートリスト、カットオフ、パイチャート等)を削除
removeAllChild("sortableList");
removeAllChild("rate");
removeAllChild("optionHeader");
removeAllChild("cutoff");
removeAllChild("pieContainer");
removeAllChild("container");
// 「取得中」を表示
document.getElementById('retrieving').style.display = "block";
if(document.getElementById('bar').checked)
chartType = 'bar';
else if(document.getElementById('heatmap').checked)
chartType = 'heatmap';
else
chartType = "bar_bundle";
gChartType = chartType
var result = retrieveChartData(targets, chartType);
document.getElementById('retrieving').style.display = "none";
var root = document.getElementById('container');
root.textContent = '';
var cutoff = document.getElementById("cutoff");
var cutoffText = document.createElement("input");
cutoffText.id = "cutoffValue";
cutoffText.type = "text";
cutoffText.value = 0;
cutoffText.min = 0;
cutoffText.max = 80;
cutoffText.maxLength = 2;
cutoffText.style.width = "4em";
cutoffText.style.textAlign = "right";
cutoff.appendChild(cutoffText);
/*
var unitLabel = document.createElement("span");
unitLabel.innerHTML = "%";
cutoff.appendChild(unitLabel);
*/
var cutoffButton = document.createElement("input");
cutoffButton.value = "% < cutoff";
cutoffButton.type = "button";
cutoff.appendChild(cutoffButton);
//var result = JSON.parse(escape(jsonp));
if(gChartType == 'bar')
showBarChart(result);
else if(gChartType == 'heatmap'){
showHeatmap(result);
}else
showBarBundleChart(result);
// 表示ボタン、チャートdom等1を表示
document.getElementById("showButton").disabled = false;
document.getElementById("bar") .disabled = false;
document.getElementById("heatmap") .disabled = false;
document.getElementById("sortableList").style.display = "block";
}
// バーチャート(バンドル) /////////////////////////////////////////////////////////////////////////////////////////////////////
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setBarBundleData()
{ // inchiキー未処理 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
var target = [];
// カットオフ値を考慮
var cutoff = parseInt(document.getElementById("cutoffValue").value);
for(var j = 0; j < chart[0].data[0].length; j ++){
var not0 = false;
for(var i = 0; i < chart[0].series.length; i ++){
if(chart[0].data[i][j][1] >= cutoff){
not0 = true;
break;
}
}
target[j] = not0;
}
for(var j = 0; j < chart[0].series.length; j ++){
var i = 0;
var data = [];
var xLabels = [];
for(var k = 0; k < chart[0].srcdata[j].length; k ++){
if(target[k]){ // チェックボックスにチェックがついていれば表示対象
// data[i] = [chart[j].xLabels[k], chart[j].data[k][1]];
if(document.getElementById("ratio").checked) // 相対値か絶対値か
data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k] * 100 / chart[0].max];
else
data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k]];
xLabels[i++] = chart[0].xLabels[k];
}
}
if(document.getElementById("ratio").checked){ // 相対値でのY軸タイトル
chart[0].yAxis[0].setExtremes(0, 100);
chart[0].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"});
chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'})
} else { // 絶対値でのY軸タイトル
chart[0].yAxis[0].setExtremes(0, chart[0].max);
chart[0].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[0].quantification + ")"});
chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'})
}
chart[0].xAxis[0].categories = xLabels;
chart[0].series[j].setData(data, true);
}
unzoomBarCharts();
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showBarBundleChart(result)
{
// create "ignore 0-intensity" button
document.getElementById("cutoffValue").onchange = function(){
setBarBundleData();
};
// create "sortable list"
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < result[0].map.length; i ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", i);
cbox.setAttribute("disabled", "yes");
cbox.id = "item" + i;
cbox.onchange = function(e){
// 表示/非表示の切り替え
/* var index = this.parentElement.parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}*/
setBarBundleData();
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + i);
label.innerHTML = escape(result[0].map[i].title);
line.appendChild(label);
sortableList.appendChild(line);
}/*
$('#sortableList').sortable({
cursor: 'move',
update: function(event, ui){
/* var index = ui.item[0].parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}*//*
setBarBundleData();
}
});*/
// 凡例の切り替えを行うコンボボックス
var changeLegend = document.getElementById("optionHeader");
var legendLabel = document.createElement("span");
legendLabel.innerHTML = "Legend";
changeLegend.appendChild(legendLabel);
var selectLegend = document.createElement("select");
selectLegend.id = "selectLegend";
for(var i = 0; i < legendOptions.length; i ++){
var option = document.createElement('option');
option.setAttribute("value", legendOptions[i]);
if(legendOptions[i] == "Treatment")
option.setAttribute("selected", "true");
option.innerHTML = legendOptions[i];
selectLegend.appendChild(option);
}
selectLegend.onchange = function(e){
var index = document.getElementById("selectLegend").selectedIndex;
for(var i = 0; i < chart[0].series.length; i ++){
chart[0].series[i].update({name:chart[0].meta[i][legendOptions[index]]}, false);
}
chart[0].redraw(false);
}
changeLegend.appendChild(selectLegend);
// create barchart(s)
gBarData = [];
chart = [];
piechart = [];
seriesData = [];
data = [];
srcdata = [];
var meta = [];
var root = document.getElementById('container');
var unifiedFlag = true;
var unitType = '';
// データの整理
for(var i = 0; i < result[0].map.length; i ++){
// 単位の統一がなされているかチェック
if(i == 0) // 一番最初の単位を基準とする
unitType = result[0].map[i].meta.Quantification;
else if(unitType != result[0].map[i].meta.Quantification){ // 基準の単位と違う単位を発見
unitType = '???';
unifiedFlag = false;
}
gBarData[i] = [];
data[i] = [];
srcdata[i] = [];
var xLabels = [];
for(var j = 0; j < result[0].map[i].data.length; j ++){
// data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
data[i][j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].maxOfAll)]; // 相対値を計算
srcdata[i][j] = attrEscape(result[0].map[i].data[j][0]); // もともとの値を計算
xLabels[j] = attrEscape(result[0].x[j]); // X軸ラベル
var type = result[0].map[i].title.replace(/.*\//,"");
gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // LBG + lipid class + chain
}
meta[i] = result[0].map[i].meta;
seriesData[i] = {
name: attrEscape(result[0].map[i].meta["Treatment"]),
data: data[i],
events: {
click: function(event) {
//alert(event.point.name);
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
jumpToStructureOnBar(index, event.point.x);
}
}
}
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container' + 0;
parent.setAttribute("order", 0);
root.appendChild(parent);
chart[0] = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent
},
title: {
text: attrEscape(result[0].title)
},
xAxis: {
min: 0,
type: 'category',
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity (%)'
}
},
legend: {
enabled: true
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>',
formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}
},
series: seriesData
});
chart[0].xAxis[0].categories = xLabels;
chart[0].data = data;
chart[0].srcdata = srcdata;
chart[0].max = result[0].maxOfAll;
chart[0].xLabels = xLabels;
chart[0].quantification = unitType;
chart[0].meta = meta;
// 絶対量/相対量を切り替えるチェックボックス
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarBundleData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
resizeChart();
if(unifiedFlag == false)
alert("intensityの単位が統一されていません。");
}
// バーチャート ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
// JCBLの構造ページへ飛ぶ
function jumpToStructureOnBar(seq, x)
{
window.open("http://jcbl.jp/wiki/LBG" + gBarData[seq][x], "new");
console.log(seq + "/" + x + " => " + gBarData[seq][x]);
}
// 全バーチャートのズーム解除 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function unzoomBarCharts() {
for(var i = 0; i < chart.length; i ++){
//chart[i].xAxis[0].options.tickInterval = defaultTickInterval;
chart[i].xAxis[0].isDirty = true;
chart[i].xAxis[0].setExtremes(null, null, animation=true);
}
document.getElementById("resetZoomButton").style.visibility = "hidden";
}
// バーチャートデータの切り替え（表示/非表示、0-intensityで呼ばれる) //////////////////////////////////////////////////////////////////////////////////////////////////////
function setBarchartData()
{ // inchiキー未処理 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
for(var j = 0; j < chart[0].data.length; j ++){
var not0 = false;
for(var i = 0; i < chart.length; i ++){
if(chart[i].data[j][1] >= cutoff){
not0 = true;
break;
}
}
target[j] = not0;
}
for(var j = 0; j < chart.length; j ++){
var i = 0;
var data = [];
var xLabels = [];
for(var k = 0,l = 0; k < chart[j].data.length; k ++){
if(target[k]){
// data[i] = [chart[j].xLabels[k], chart[j].data[k][1]];
if(document.getElementById("ratio").checked)
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k] * 100 / chart[j].max];
else
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k]];
xLabels[i++] = chart[j].xLabels[k];
}
}
if(document.getElementById("ratio").checked){
chart[j].yAxis[0].setExtremes(0, 100);
chart[j].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'})
} else {
chart[j].yAxis[0].setExtremes(0, chart[j].max);
chart[j].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[j].quantification + ")"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'})
}
chart[j].xAxis[0].categories = xLabels;
chart[j].series[0].setData(data, true);
}
unzoomBarCharts();
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showBarChart(result)
{
function computeTickInterval(xMin, xMax)
{
var zoomRange = xMax - xMin;
if(zoomRange <= 2)
currentTickInterval = 0.5;
if(zoomRange < 20)
currentTickInterval = 1;
else if(zoomRange < 100)
currentTickInterval = 5;
}
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
setBarchartData();
};
// create sortable list
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < result[0].map.length; i ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", i);
cbox.id = "item" + i;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var seq = this.getAttribute("seq");
var option;
if(this.checked){
option = "block";
} else {
option = "none";
}
document.getElementById("container" + seq).style.display = option;
document.getElementById("pieContainer" + seq).style.display = option;
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + i);
//console.log(result);
label.innerHTML = (i+1) + "." + escape(result[0].map[i].title);
line.appendChild(label);
sortableList.appendChild(line);
}
$('#sortableList').sortable({
cursor: 'move',
update: function(event, ui){
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var seq = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
document.getElementById("container" + seq).setAttribute("order", i);
document.getElementById("pieContainer" + seq).setAttribute("order", i);
}
$("#container").html(
$("#container > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
$("#pieContainer").html(
$("#pieContainer > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
}
});
// パイチャートの表示/非表示の切り替え
var switchPieHidden = document.getElementById("optionHeader");
var hiddenButton = document.createElement("input");
hiddenButton.setAttribute("type", "button");
hiddenButton.setAttribute("value", "hide piechart(s)");
hiddenButton.id = "switchPieHidden";
hiddenButton.onclick = function(e){
var pieContainer = document.getElementById("pieContainer");
if(pieContainer.style.display == "none"){
pieContainer.style.display = "block";
document.getElementById("switchPieHidden").setAttribute("value", "hide piechart(s)");
} else {
pieContainer.style.display = "none";
document.getElementById("switchPieHidden").setAttribute("value", "show piechart(s)");;
}
resizeChart();
}
switchPieHidden.appendChild(hiddenButton);
// create barchart(s)
gBarData = [];
chart = [];
piechart = [];
var root = document.getElementById('container');
var pieRoot = document.getElementById('pieContainer');
for(var i = 0; i < result[0].map.length; i ++){
gBarData[i] = [];
// データの整理
var data = [];
var srcdata = [];
var xLabels = [];
for(var j = 0; j < result[0].map[i].data.length; j ++){
// data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
srcdata[j] = attrEscape(result[0].map[i].data[j][0]);
xLabels[j] = attrEscape(result[0].x[j]);
// gBarData[i][j] = inchiEscape(result[0].map[i].data[j][2]); // InChIキー
var type = result[0].map[i].title.replace(/.*\//,"");
gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container' + i;
parent.setAttribute("order", i);
root.appendChild(parent);
chart[i] = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent,
height: 250,
resetZoomButton: {
theme: {
display: 'none'
}
}
},
title: {
text: (i+1) + '.' + attrEscape(result[0].map[i].title)
},
xAxis: {
min: 0,
type: 'category',
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
events : {
afterSetExtremes: function(){
if(!this.chart.options.chart.isZoomed){
// 全バーチャートの拡大率を統一する
if(this.chart.options.chart.isZoomed !== undefined)
document.getElementById("resetZoomButton").style.visibility = "visible";
var xMin = this.chart.xAxis[0].min;
var xMax = this.chart.xAxis[0].max;
var zmRange = computeTickInterval(xMin, xMax);
for(var i = 0; i < chart.length; i ++){
chart[i].xAxis[0].options.tickInterval = zmRange;
chart[i].xAxis[0].isDirty = true;
if(chart[i] !== this){
chart[i].options.chart.isZoomed = true;
chart[i].xAxis[0].setExtremes(xMin, xMax, true);
chart[i].options.chart.isZoomed = false;
}
}
}
},
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity (%)'
}
},
legend: {
enabled: false
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>',
formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}
},
series: [{
name: 'Population',
data: data,
color: barColor,
events: {
click: function(event) {
//alert(event.point.name);
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
jumpToStructureOnBar(index, event.point.x);
}
}
}]
});
chart[i].xAxis[0].categories = xLabels;
chart[i].data = data;
chart[i].srcdata = srcdata;
chart[i].max = result[0].map[i].max;
chart[i].xLabels = xLabels;
chart[i].quantification = result[0].map[i].meta.Quantification;
// piechartの追加
var pieParent = document.createElement('div');
pieParent.id = 'pieContainer' + i;
pieParent.setAttribute("order", i);
pieRoot.appendChild(pieParent);
piechart[i] = new Highcharts.Chart({
chart: {
plotBackgroundColor: null,
plotBorderWidth: null,
plotShadow: false,
type: 'pie',
renderTo: pieParent,
height: 250
},
title: {
text: (i+1) + '.Intensity ratio'
},
tooltip: {
pointFormat: '{series.name}: <b>{point.percentage:.1f}%</b>'
},
plotOptions: {
pie: {
allowPointSelect: true,
cursor: 'pointer',
dataLabels: {
enabled: true,
format: '<b>{point.name}</b>: {point.percentage:.1f} %',
style: {
color: (Highcharts.theme && Highcharts.theme.contrastTextColor) || 'black'
}
}
}
},
series: [{
name: 'Rate',
colorByPoint: true,
data: result[0].map[i].pie,
events: {
click: function(event) {
// パイチャートをクリックしたら、別lipidlcassへ切り替える
barColor = event.point.color;
var nextType = event.point.name;
var targets = [];
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var w = sortableList.childNodes[i].childNodes[1].innerHTML.replace(/^[0-9]+./,"").split("/");
targets.push(w[0] + "/" + w[1] + "/" + nextType);
}
showChart(targets);
}
}
}]
});
}
// 絶対量/相対量を切り替えるチェックボックス
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarchartData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
resizeChart();
}
// ヒートマップ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
// JCBLの構造ページへ飛ぶ
function jumpToStructureOnHeatmap(seq, x, y)
{
window.open("http://jcbl.jp/wiki/LBG" + gHeatmapData[seq].map[0].title.replace(/.*\//, "") + gHeatmapData[seq].x[x].replace("/","-"), "new");
// console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq][y][x]);
console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq].x[x].replace("/","-"));
}
// ヒートマップデータの切り替え（表示/非表示、0-intensityで呼ばれる) ////////////////////////////////////////////////////////////////////////////////////////////////////////
// param index - 何番目のデータか(おそらく0のみ)
// param seq - 順番を格納した配列
// return なし
function setHeatmapData(index, seq)
{
var i = 0;
var length = gHeatmapData[index].map.length;
// カットオフ値の考慮
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
var xLabels = [];
for(var k = 0; k < chart[index].data[0].length; k ++){
var not0 = false;
for(var j = 0; j < length; j ++){
if(chart[index].data[j][k] >= cutoff){
not0 = true;
break;
}
}
target[k] = not0;
if(not0)
xLabels[i++] = gHeatmapData[index].x[k];
}
var data = [];
var yLabels = [];
chart[index].inchi = [];
i = 0;
// 表示されている中での最大値を取得する
var maxOfDisplayedAll = 0;
for(var j = 0; j < seq.length && j < length; j ++){
if(maxOfDisplayedAll < gHeatmapData[index].map[seq[j]].max)
maxOfDisplayedAll = gHeatmapData[index].map[seq[j]].max;
}
var max = 0;
// データのセット
for(var j = 0; j < seq.length && j < length; j ++){
if(document.getElementById("eachInRate").checked)
max = gHeatmapData[index].map[seq[j]].max;
else
max = maxOfDisplayedAll;
// max = gHeatmapData[index].maxOfAll; // 常に全ての最大値を基準にする場合はこちらを使う
chart[index].inchi[j] = [];
for(var k = 0,l = 0; k < gHeatmapData[index].map[seq[j]].data.length; k ++){
if(target[k]){
data[i] = [l++, seq.length-j-1, attrEscape(gHeatmapData[index].map[seq[j]].data[k][0] * 100 / max)]; // 相対値の計算
chart[index].inchi[j][k] = inchiEscape(gHeatmapData[index].map[seq[j]].data[k].meta["InChIKey"]); // インチ―キー
i ++;
}
}
yLabels[j] = (parseInt(seq[j])+1) + "." + attrEscape(gHeatmapData[index].map[seq[j]].title.replace(/\/[^\/]+$/, "")); // Y軸ラベル
}
yLabels.reverse();
chart[index].zoomOut();
chart[index].series[0].setData(data, true);
chart[index].yAxis[0].setCategories(yLabels);
chart[index].xAxis[0].setCategories(xLabels);
// バグ対策用 - なぜか、データを再セットすると拡大されるため
chart[index].xAxis[0].isDirty = true;
chart[index].xAxis[0].setExtremes(null, null,animation=true);
chart[index].yAxis[0].isDirty = true;
chart[index].yAxis[0].setExtremes(null, null,animation=true);
}
// ヒートマップのデータを再設定する ////////////////////////////////////////////////////////////////////////
// param index - ソートリストのインデックス（おそらく0のみ）
// return なし
function resetHeatmapData(index)
{
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
}
// ヒートマップ作成 /////////////////////////////////////////////////////////////////////////////////////////
// param result チャートデータ
// return なし
function showHeatmap(result)
{
gHeatmapData = [];
var root = document.getElementById('container');
var sortableList = document.getElementById("sortableList");
chart = [];
gHeatmapData = result;
for(var i = 0; i < result.length; i ++){
var title = attrEscape(result[i].title);
// 親要素
var parent = document.createElement('div');
parent.id = 'container' + i;
root.appendChild(parent);
var index = 0;
var data = [];
var yLabels = [];
var length = result[i].map.length
var inchi = [];
var ratioData = [];
// データの整理
for(var j = 0; j < length; j ++){
inchi[j] = [];
ratioData[j] = [];
for(var k = 0; k < result[i].map[j].data.length; k ++){
data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].map[j].max)]; // 相対値の計算
// data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].maxOfAll)];
inchi[j][k] = inchiEscape(result[i].map[j].data[k].meta["InChIKey"]); // インチ-キーの格納
ratioData[j][index] = data[index][2]; // ???
index ++;
}
yLabels[j] = (j+1) + "." + attrEscape(result[i].map[j].title.replace(/\/[^\/]+$/, "")); // Y軸ラベル
}
yLabels.reverse(); // highchartsの性質上、Y軸ラベルを反転させる
for(var j = 0; j < result[i].x.length; j ++)
result[i].x[j] = attrEscape(result[i].x[j]); // X軸ラベル
// create "ignore 0-intensity button"
document.getElementById("cutoffValue").onchange = function(){
// 表示/非表示の切り替え // 下と同じなので、後でまとめる
for(var index = 0; index < chart.length; index ++){
resetHeatmapData(index);
}
};
// create "sortable list"
var listDiv = document.createElement("div");
listDiv.id = "sortableList" + i;
for(var j = 0; j < result[i].map.length; j ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", j);
cbox.id = "item" + j;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var index = this.parentElement.parentElement.id.replace("sortableList", "");
resetHeatmapData(index);
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + j);
label.innerHTML = (j+1) + "." + escape(result[i].map[j].title);
line.appendChild(label);
listDiv.appendChild(line);
}
sortableList.appendChild(listDiv);
$('#sortableList' + i).sortable({
cursor: 'move',
update: function(event, ui){
var index = ui.item[0].parentElement.id.replace("sortableList", "");
resetHeatmapData(index);
}
});
$('#sortableList').sortable(false);
// それぞれのレート/全体でのレート
var rateCbox = document.createElement("input");
rateCbox.setAttribute("type", "checkbox");
rateCbox.setAttribute("checked", "yes");
rateCbox.id = "eachInRate";
rateCbox.onchange = function(e){
// rateの切り替え
resetHeatmapData(0); // 一つであると仮定するので、複数ある場合は修正が必要なことに注意
};
var label = document.createElement("label");
label.setAttribute("for", "eachInRate");
label.innerHTML = "Each in rate";
document.getElementById("rate").appendChild(rateCbox);
document.getElementById("rate").appendChild(label);
// ヒートマップ作成
chart[i] = new Highcharts.Chart({
chart: {
type: 'heatmap',
zoomType: 'xy',
animation: 1,
marginBottom: 0,
plotBorderWidth: 0,
renderTo: parent,
animation: true,
},
scrollbar: {
enabled: true
},
title: {
text: title,
align: 'left'
},
xAxis: {
categories: result[i].x,
opposite: true,
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
},
yAxis: {
categories: yLabels,
title: null,
labels: {
step: 1
}
},
colorAxis: {
min: 0,
max: 100,
minColor: '#ffffff',
maxColor: Highcharts.getOptions().colors[8]
},
legend: {
align: 'right',
layout: 'vertical',
margin: 0,
verticalAlign: 'top',
y: 100,
symbolHeight: 145
},
tooltip: {
formatter: function () {
return this.series.yAxis.categories[this.point.y] + '<br />' +
this.series.xAxis.categories[this.point.x] + '<br />' +
(Math.round(this.point.value*10)/10) + ' %';
}
},
series: [{
name: 'HEK',
borderWidth: 1,
data: data,
dataLabels: {
enabled: false,
color: '#000000'
},
point: {
events: {
click: function(event){
// var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
jumpToStructureOnHeatmap(0, event.point.x, event.point.y);
// jumpToJcbl(event.point.series.chart.inchi[event.point.y][event.point.x]);
}
}
}
}]
});
chart[i].inchi = inchi;
chart[i].data = ratioData;
//chart.setSize(600,300,false);
}
resizeChart();
}
// chainチャート ////////////////////////////////////////////////////////////////////
// param result 対象データ
// return なし
function showChainChart(result)
{
gChartType = "chain";
// create barchart(s)
// gBarData = [];
// piechart = [];
var root = document.getElementById('container');
// データの整理
var data = [];
// var srcdata = [];
// var xLabels = [];
for(var j = 0; j < result.intensity.length; j ++){
data[j] = [attrEscape(result.x[j]), attrEscape(result.intensity[j] * 100 / result.maxOfAll)]; // 相対値の計算
// srcdata[j] = attrEscape(result.intensity[j]);
// xLabels[j] = attrEscape(result.x[j]);
// var type = result[0].map[i].title.replace(/.*\//,"");
// gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container0';
root.appendChild(parent);
chart = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent,
height: 500
},
title: {
text: attrEscape(result.title)
},
xAxis: {
min: 0,
type: 'category',
categories:result.x,
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity (%)'
}
},
legend: {
enabled: false
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>',
formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}
},
series: [{
name: 'Population',
data: data,
events: {
click: function(event) {
//alert(event.point.name);
}
}
}]
});
// chart.xAxis[0].categories = result.x;
// chart[i].data = data;
// chart[i].srcdata = srcdata;
// chart[i].max = result[0].map[i].max;
// chart[i].xLabels = xLabels;
// chart[i].quantification = result[0].map[i].meta.Quantification;
// 絶対量か相対量か
/*
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarchartData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
*/
resizeChart();
}
// ※未使用※ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function getTarget(children, target)
{
for(var i = 0; i < children.length; i ++){
if(target == children[i].childNodes[0].textContent){
return $(children[i]);
}
// console.log(children[i].childNodes[0].textContent);
}
return null;
}
function jumpToJcbl(inchi)
{
window.open("http://jcbl.jp/","new");
console.log(inchi);
}
