MediaWiki:Lipoquality.js
From Metabolomics.JP
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// html /////////////////////////////////////////////////////////////////////////////////////////////////////////
// <span id="search"></span><span id="show"></span>
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// 2017/03/15 ・パイチャートのタイトルを「ratio」から「Intensity ratio」へ変更
// ・パイチャートのサイズ統一をキャンセル
// 2017/03/13 ・ヒートマップにおいて、カットオフ値が相対値ではなく絶対値で計算していた不具合を修正
// 2017/03/06 ・カットオフに「%」を追加
// ・パイチャートのサイズを統一
// ・カットオフ値をnumberからtextにして、2桁までしか入力できないよう修正(つまり、-9～99までに制限)
// 2017/01/31 ・ひとまとめにした棒グラフをサポート
// 2017/01/26 ・棒グラフで絶対量の時に、単位を表示するように変更
// 2017/01/06 ・新フォーマットに対応
// ・barchartにおいて、ratioと絶対量で切り替え可能とした
// ※ cutoffをどうするか検討中
// 2016/10/26 ・ヒートマップを拡大した状態でsetDataするとおかしな挙動になるため
// 必ずzoomOutするよう修正
// ・画像出力できるよう修正
// ・画像出力時、X軸がおかしくなるバグを修正
// 2016/10/18 ・highchartsの仕様が変わったようで、setDataやズームをするとX軸がおかしくなるので、
// setCategoriesを使用して対処
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// external script //////////////////////////////////////////////////////////////////////////////////////////////
mw.loader.load( ['jquery.ui.sortable'] );
mw.loader.load('https://code.highcharts.com/stock/highstock.js', "text/javascript");
// initialize //////////////////////////////////////////////////////////////////////////////////////////////////
addOnloadHook(init);
// 初期化 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
const DEFAULT_BAR_COLOR = "#7cb5ec";
const MARGIN = 30;
var barColor = DEFAULT_BAR_COLOR;
function init()
{
// highstock.jsに依存するため、別で読み込む
var heatmapJS = document.createElement("script");
heatmapJS.src = "https://code.highcharts.com/modules/heatmap.js";
document.getElementsByTagName("head")[0].appendChild(heatmapJS);
var exportingJS = document.createElement("script");
exportingJS.src = "https://code.highcharts.com/modules/exporting.js";
document.getElementsByTagName("head")[0].appendChild(exportingJS);
var searchButton = document.createElement("input");
searchButton.value = "search";
searchButton.id = "searchButton";
searchButton.type = "button";
searchButton.style.width = "100%";
searchButton.onclick = function(){search()};
document.getElementById("search").appendChild(searchButton);
var showButton = document.createElement("input");
showButton.value = "show graph";
showButton.id = "showButton";
showButton.type = "button";
showButton.disabled = "yes";
showButton.onclick = function(){barColor = DEFAULT_BAR_COLOR; showChart()};
document.getElementById("show").appendChild(showButton);
var checkButton = document.createElement("input");
checkButton.value = "all check/uncheck";
checkButton.type = "button";
checkButton.onclick = function(){checkAllResult()};
document.getElementById("check").appendChild(checkButton);
document.getElementById("graphform").style.display = "none";
// insert "Reset zoom" button
var resetZoomButton = document.createElement("input");
resetZoomButton.setAttribute("type", "button");
resetZoomButton.value = "Reset zoom";
resetZoomButton.id = "resetZoomButton";
resetZoomButton.style.visibility = "hidden";
resetZoomButton.onclick = unzoomBarCharts;
document.getElementById("resetZoom").appendChild(resetZoomButton);
setCombobox('SampleSource');
setCombobox('SampleType');
setCombobox('LipidClass');
$(window).resize(function() {
resizeChart();
});
}
// ウィンドウサイズが変更されたとき、チャートの幅も修正する ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function resizeChart()
{
if(chart == undefined || chart.length == 0)
return;
if(gChartType == "bar"){
// barchart & piechart
var height = 300;
var pieWidth = 400;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - pieWidth - MARGIN;
if(width < 300)
width = 300;
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
for(var i = 0; i < piechart.length; i ++)
$("#pieContainer" + i).highcharts().setSize(pieWidth, height);
} else {
var height = 400;
var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - MARGIN;
// heatmap or barchart(bundle)
for(var i = 0; i < chart.length; i ++)
$("#container" + i).highcharts().setSize(width, height);
}
}
// 検索ボックスの初期化 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setCombobox(name)
{
var url = '/mediawiki/api.php?action=query&prop=revisions&redirects=1&titles=Lipoquality:' + name + '&rvprop=content&format=xml'
var xmlHttpRequest = new XMLHttpRequest();
xmlHttpRequest.onreadystatechange = function()
{
var READYSTATE_COMPLETED = 4;
if(this.readyState == READYSTATE_COMPLETED){
var HTTP_STATUS_OK = 200;
if(this.status == HTTP_STATUS_OK) {
// success
var parser = new DOMParser();
var dom = parser.parseFromString(this.response.trim(), "text/xml");
var text = dom.getElementsByTagName("rev");
var lines = text[0].textContent.split("\n");
var select = document.getElementById(name.toLowerCase());
if(name != 'LipidClass')
lines.unshift('All');
for(var i = 0; i < lines.length; i ++){
var opt = document.createElement('option');
opt.value = opt.textContent = lines[i].replace(/^\*/, '').replace(/^ */, '').replace(/ *$/, '').replace(/"/g, """).replace(/'/g, "&rsquo");;
select.appendChild(opt);
}
} else {
// error
console.log('search failed. ' + this.status + ':' + this.statusText + "/" + this.readyState);
}
}
}
// search
xmlHttpRequest.open('GET', url, true);
xmlHttpRequest.responseType = 'text';
xmlHttpRequest.send(null);
}
// XSS対策用 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function escape(text)
{
if(isFinite(text))
return text;
return text.replace(/&/g, "&").replace(/</g, "<").replace(/>/g, ">");
}
function attrEscape(text)
{
if(isFinite(text))
return text;
return text.replace(/&/g, "&").replace(/</g, "<").replace(/>/g, ">").replace(/"/g, """).replace(/'/g, "’");
}
function inchiEscape(text)
{
if(isFinite(text))
return text;
return text.replace(/^InChIKey=/, "").replace(/[^A-Z0-9-]/g, "");
}
// 検索 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function search()
{
document.getElementById("searchButton").disabled = true;
document.getElementById('hit').innerHTML = '';
document.getElementById("showButton").disabled = "yes";
document.getElementById("graphform").style.display = "none";
var classification = document.getElementById("samplesource").value;
var sample = document.getElementById("sampletype").value;
var type = document.getElementById("lipidclass").value;
var url = 'https://script.google.com/macros/s/AKfycbxW5WpkJH0PUmmLrMtrluvkaKmz0OTTfeBucudy5-LxalQ7vus/exec?classification=' + classification + '&sample=' + sample + '&type=' + type + '&q=search&callback=hasSearched';
// var url = '/lipo/json.txt'
document.getElementById('searching').style.display = "block";
// remove old elements
var root = document.getElementById('result');
root.textContent = '';
for(var i = root.childNodes.length-1; i >= 0; i --)
root.removeChild(root.childNodes[i]);
// jsonpを使って検索
var jsonp = document.createElement('script');
jsonp.src = url;
document.head.appendChild(jsonp);
}
function hasSearched(jsonp)
{
document.getElementById('searching').style.display = "none";
var root = document.getElementById('result');
var result = jsonp;
//var result = JSON.parse(escape(jsonp));
document.getElementById('hit').innerHTML = 'result. ' + escape(result.length) + ' hit(s).';
// 最長文字数を調べる
var lenmax = 0;
for(var i = 0; i < result.length; i ++){
if(result[i].title.length > lenmax)
lenmax = result[i].title.length;
}
lenmax += 6; // "(meta)"分
lenmax /= 1.5;
for(var i = 0; i < result.length; i ++){
var span = document.createElement('span');
span.style.display = "inline-block";
span.style.width = lenmax + "em";
var check = document.createElement('input');
check.type = 'checkbox';
check.id = attrEscape(result[i].title);
check.value = attrEscape(result[i].title);
check.name = 'target';
check.className = "results";
check.onchange = function(e){
checkSelection();
};
span.appendChild(check);
var title = document.createElement('label');
title.setAttribute('for', attrEscape(result[i].title));
title.innerHTML = escape(result[i].title) + ' <a href="' + result[i].meta["Method link"] + '" target="_blank">(meta)</a>';
span.appendChild(title);
root.appendChild(span);
}
document.getElementById("searchButton").disabled = false;
document.getElementById("graphform").style.display = "block";
}
function checkSelection()
{
var c = document.getElementsByClassName("results");
var disabled = true;
for(var i = 0; i < c.length; i ++){
if(c[i].checked){
disabled = false;
break;
}
}
document.getElementById("showButton").disabled = disabled;
}
function checkAllResult()
{
var c = document.getElementsByClassName("results");
var checked = 0;
for(var i = 0; i < c.length; i ++){
if(c[i].checked)
checked ++;
}
var state = true;
if(checked == c.length)
state = false;
for(var i = 0; i < c.length; i ++)
c[i].checked = state;
checkSelection();
}
var gChartType;
// チャート表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showChart()
{
var targets = '';
var boxes = document.getElementsByName('target');
for(var i = 0; i < boxes.length; i ++){
if(boxes[i].checked)
targets += ',' + boxes[i].value;
}
if(targets.length == 0){
alert("選択してください");
return;
}
targets = targets.substring(1);
document.getElementById("resetZoomButton").style.visibility = "hidden";
document.getElementById("showButton").disabled = true;
document.getElementById("bar") .disabled = true;
document.getElementById("heatmap") .disabled = true;
document.getElementById("sortableList").style.display = "none";
var sortableList = document.getElementById("sortableList");
for(var i = sortableList.childNodes.length-1; i >= 0; i --)
sortableList.removeChild(sortableList.childNodes[i]);
var rateDiv = document.getElementById("rate");
for(var i = rateDiv.childNodes.length-1; i >= 0; i --)
rateDiv.removeChild(rateDiv.childNodes[i]);
if(document.getElementById('bar').checked)
chartType = 'bar';
else if(document.getElementById('heatmap').checked)
chartType = 'heatmap';
else
chartType = "bar_bundle";
gChartType = chartType
retrieveChartData(targets, chartType);
}
// データ取得 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function retrieveChartData(targets, chartType)
{
var url = 'https://script.google.com/macros/s/AKfycbxW5WpkJH0PUmmLrMtrluvkaKmz0OTTfeBucudy5-LxalQ7vus/exec?id=' + targets + '&type=' + chartType + '&q=data&callback=hasRetrieved';
//var url = '/lipo/data.php?id=' + targets + '&type=' + chartType + '&q=data';
// jsonpを使った取得
var cutoff = document.getElementById("cutoff");
for(var i = cutoff.childNodes.length-1; i >= 0; i --)
cutoff.removeChild(cutoff.childNodes[i]);
var pieRoot = document.getElementById('pieContainer');
for(var i = pieRoot.childNodes.length-1; i >= 0; i --)
pieRoot.removeChild(pieRoot.childNodes[i]);
var root = document.getElementById('container');
for(var i = root.childNodes.length-1; i >= 0; i --)
root.removeChild(root.childNodes[i]);
document.getElementById('retrieving').style.display = "block";
var jsonp = document.createElement('script');
jsonp.src = url;
document.head.appendChild(jsonp);
}
// コールバック関数(jsonp) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function hasRetrieved(jsonp)
{
document.getElementById('retrieving').style.display = "none";
var root = document.getElementById('container');
// remove old elements
root.textContent = '';
// for(var i = root.childNodes.length-1; i >= 0; i --)
// root.removeChild(root.childNodes[i]);
/* var chartType;
if(document.getElementById('bar').checked)
chartType = 'bar';
else if(document.getElementById('heatmap').checked)
chartType = 'heatmap';
else
chartType = 'bar_bundle';*/
var cutoff = document.getElementById("cutoff");
var cutoffText = document.createElement("input");
cutoffText.id = "cutoffValue";
cutoffText.type = "text";
cutoffText.value = 0;
cutoffText.min = 0;
cutoffText.max = 80;
cutoffText.maxLength = 2;
cutoffText.style.width = "4em";
cutoffText.style.textAlign = "right";
cutoff.appendChild(cutoffText);
/*
var unitLabel = document.createElement("span");
unitLabel.innerHTML = "%";
cutoff.appendChild(unitLabel);
*/
var cutoffButton = document.createElement("input");
cutoffButton.value = "% < cutoff";
cutoffButton.type = "button";
cutoff.appendChild(cutoffButton);
var result = jsonp;
//var result = JSON.parse(escape(jsonp));
if(gChartType == 'bar')
showBarChart(result);
else if(gChartType == 'heatmap'){
showHeatmap(result);
}else
showBarBundleChart(result);
document.getElementById("showButton").disabled = false;
document.getElementById("bar") .disabled = false;
document.getElementById("heatmap") .disabled = false;
document.getElementById("sortableList").style.display = "block";
}
// バーチャート(バンドル) /////////////////////////////////////////////////////////////////////////////////////////////////////
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setBarBundleData()
{ // inchiキー未処理 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
for(var j = 0; j < chart[0].data[0].length; j ++){
var not0 = false;
for(var i = 0; i < chart[0].series.length; i ++){
if(chart[0].data[i][j][1] >= cutoff){
not0 = true;
break;
}
}
target[j] = not0;
}
for(var j = 0; j < chart[0].series.length; j ++){
var i = 0;
var data = [];
var xLabels = [];
for(var k = 0; k < chart[0].srcdata[j].length; k ++){
if(target[k]){
// data[i] = [chart[j].xLabels[k], chart[j].data[k][1]];
if(document.getElementById("ratio").checked)
data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k] * 100 / chart[0].max];
else
data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k]];
xLabels[i++] = chart[0].xLabels[k];
}
}
if(document.getElementById("ratio").checked){
chart[0].yAxis[0].setExtremes(0, 100);
chart[0].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"});
chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'})
} else {
chart[0].yAxis[0].setExtremes(0, chart[0].max);
chart[0].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[0].quantification + ")"});
chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'})
}
chart[0].xAxis[0].categories = xLabels;
chart[0].series[j].setData(data, true);
}
unzoomBarCharts();
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showBarBundleChart(result)
{
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
setBarBundleData();
};
// create sortable list
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < result[0].map.length; i ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", i);
cbox.setAttribute("disabled", "yes");
cbox.id = "item" + i;
cbox.onchange = function(e){
// 表示/非表示の切り替え
/* var index = this.parentElement.parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}*/
setBarBundleData();
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + i);
label.innerHTML = escape(result[0].map[i].title);
line.appendChild(label);
sortableList.appendChild(line);
}/*
$('#sortableList').sortable({
cursor: 'move',
update: function(event, ui){
/* var index = ui.item[0].parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}*//*
setBarBundleData();
}
});*/
// create barchart(s)
gBarData = [];
chart = [];
piechart = [];
seriesData = [];
data = [];
srcdata = [];
var root = document.getElementById('container');
var unifiedFlag = true;
var unitType = '';
for(var i = 0; i < result[0].map.length; i ++){
// 単位の統一がなされているかチェック
if(i == 0)
unitType = result[0].map[i].meta.Quantification;
else if(unitType != result[0].map[i].meta.Quantification){
unitType = '???';
unifiedFlag = false;
}
gBarData[i] = [];
// データの整理
data[i] = [];
srcdata[i] = [];
var xLabels = [];
for(var j = 0; j < result[0].map[i].data.length; j ++){
// data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
data[i][j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].maxOfAll)];
srcdata[i][j] = attrEscape(result[0].map[i].data[j][0]);
xLabels[j] = attrEscape(result[0].x[j]);
// gBarData[i][j] = inchiEscape(result[0].map[i].data[j][2]); // InChIキー
var type = result[0].map[i].title.replace(/.*\//,"");
gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー
}
seriesData[i] = {
name: attrEscape(result[0].map[i].meta["Sample source"] + '/' + result[0].map[i].meta["Sample type"]),
data: data[i],
events: {
click: function(event) {
//alert(event.point.name);
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
getInchiOnBar(index, event.point.x);
}
}
}
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container' + 0;
parent.setAttribute("order", 0);
root.appendChild(parent);
chart[0] = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent
},
title: {
text: attrEscape(result[0].title)
},
xAxis: {
min: 0,
type: 'category',
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity (%)'
}
},
legend: {
enabled: true
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>',
formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}
},
series: seriesData
});
chart[0].xAxis[0].categories = xLabels;
chart[0].data = data;
chart[0].srcdata = srcdata;
chart[0].max = result[0].maxOfAll;
chart[0].xLabels = xLabels;
chart[0].quantification = unitType;
// 絶対量か相対量か
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarBundleData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
resizeChart();
if(unifiedFlag == false)
alert("intensityの単位が統一されていません。");
}
// バーチャート ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
var gBarData;
function getInchiOnBar(seq, x)
{
window.open("http://jcbl.jp/wiki/LBG" + gBarData[seq][x], "new");
console.log(seq + "/" + x + " => " + gBarData[seq][x]);
}
var chart;
var piechart;
var defaultTickInterval = currentTickInterval = 5;
// バーチャートのズーム解除 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function unzoomBarCharts() {
for(var i = 0; i < chart.length; i ++){
//chart[i].xAxis[0].options.tickInterval = defaultTickInterval;
chart[i].xAxis[0].isDirty = true;
chart[i].xAxis[0].setExtremes(null, null, animation=true);
}
document.getElementById("resetZoomButton").style.visibility = "hidden";
}
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setBarchartData()
{ // inchiキー未処理 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
for(var j = 0; j < chart[0].data.length; j ++){
var not0 = false;
for(var i = 0; i < chart.length; i ++){
if(chart[i].data[j][1] >= cutoff){
not0 = true;
break;
}
}
target[j] = not0;
}
for(var j = 0; j < chart.length; j ++){
var i = 0;
var data = [];
var xLabels = [];
for(var k = 0,l = 0; k < chart[j].data.length; k ++){
if(target[k]){
// data[i] = [chart[j].xLabels[k], chart[j].data[k][1]];
if(document.getElementById("ratio").checked)
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k] * 100 / chart[j].max];
else
data[i] = [chart[j].xLabels[k], chart[j].srcdata[k]];
xLabels[i++] = chart[j].xLabels[k];
}
}
if(document.getElementById("ratio").checked){
chart[j].yAxis[0].setExtremes(0, 100);
chart[j].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'})
} else {
chart[j].yAxis[0].setExtremes(0, chart[j].max);
chart[j].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[j].quantification + ")"});
chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'})
}
chart[j].xAxis[0].categories = xLabels;
chart[j].series[0].setData(data, true);
}
unzoomBarCharts();
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showBarChart(result)
{
function computeTickInterval(xMin, xMax)
{
var zoomRange = xMax - xMin;
if(zoomRange <= 2)
currentTickInterval = 0.5;
if(zoomRange < 20)
currentTickInterval = 1;
else if(zoomRange < 100)
currentTickInterval = 5;
}
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
setBarchartData();
};
// create sortable list
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < result[0].map.length; i ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", i);
cbox.id = "item" + i;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var seq = this.getAttribute("seq");
var option;
if(this.checked){
option = "block";
} else {
option = "none";
}
document.getElementById("container" + seq).style.display = option;
document.getElementById("pieContainer" + seq).style.display = option;
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + i);
label.innerHTML = (i+1) + "." + escape(result[0].map[i].title);
line.appendChild(label);
sortableList.appendChild(line);
}
$('#sortableList').sortable({
cursor: 'move',
update: function(event, ui){
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var seq = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
document.getElementById("container" + seq).setAttribute("order", i);
document.getElementById("pieContainer" + seq).setAttribute("order", i);
}
$("#container").html(
$("#container > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
$("#pieContainer").html(
$("#pieContainer > div").sort(function(o1,o2)
{
var n1 = parseInt($(o1).attr("order"), 10);
var n2 = parseInt($(o2).attr("order"), 10);
if(n1 < n2) return -1;
if(n1 > n2) return 1;
return 0;
})
);
}
});
// create barchart(s)
gBarData = [];
chart = [];
piechart = [];
var root = document.getElementById('container');
var pieRoot = document.getElementById('pieContainer');
for(var i = 0; i < result[0].map.length; i ++){
gBarData[i] = [];
// データの整理
var data = [];
var srcdata = [];
var xLabels = [];
for(var j = 0; j < result[0].map[i].data.length; j ++){
// data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)];
srcdata[j] = attrEscape(result[0].map[i].data[j][0]);
xLabels[j] = attrEscape(result[0].x[j]);
// gBarData[i][j] = inchiEscape(result[0].map[i].data[j][2]); // InChIキー
var type = result[0].map[i].title.replace(/.*\//,"");
gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー
}
// barchartの追加
var parent = document.createElement('div');
parent.id = 'container' + i;
parent.setAttribute("order", i);
root.appendChild(parent);
chart[i] = new Highcharts.Chart({
chart: {
type: 'column',
zoomType: 'x',
renderTo: parent,
height: 250,
resetZoomButton: {
theme: {
display: 'none'
}
}
},
title: {
text: (i+1) + '.' + attrEscape(result[0].map[i].title)
},
xAxis: {
min: 0,
type: 'category',
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
events : {
afterSetExtremes: function(){
if(!this.chart.options.chart.isZoomed){
if(this.chart.options.chart.isZoomed !== undefined)
document.getElementById("resetZoomButton").style.visibility = "visible";
var xMin = this.chart.xAxis[0].min;
var xMax = this.chart.xAxis[0].max;
var zmRange = computeTickInterval(xMin, xMax);
for(var i = 0; i < chart.length; i ++){
chart[i].xAxis[0].options.tickInterval = zmRange;
chart[i].xAxis[0].isDirty = true;
if(chart[i] !== this){
chart[i].options.chart.isZoomed = true;
chart[i].xAxis[0].setExtremes(xMin, xMax, true);
chart[i].options.chart.isZoomed = false;
}
}
}
},
}
},
scrollbar: {
enabled: true
},
yAxis: {
min: 0,
max: 100,
title: {
text: 'Relative Intensity (%)'
}
},
legend: {
enabled: false
},
tooltip: {
pointFormat: '<b>{point.y:.1f} %</b>',
formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}
},
series: [{
name: 'Population',
data: data,
color: barColor,
events: {
click: function(event) {
//alert(event.point.name);
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
getInchiOnBar(index, event.point.x);
}
}
}]
});
chart[i].xAxis[0].categories = xLabels;
chart[i].data = data;
chart[i].srcdata = srcdata;
chart[i].max = result[0].map[i].max;
chart[i].xLabels = xLabels;
chart[i].quantification = result[0].map[i].meta.Quantification;
// piechartの追加
var pieParent = document.createElement('div');
pieParent.id = 'pieContainer' + i;
pieParent.setAttribute("order", i);
pieRoot.appendChild(pieParent);
piechart[i] = new Highcharts.Chart({
chart: {
plotBackgroundColor: null,
plotBorderWidth: null,
plotShadow: false,
type: 'pie',
renderTo: pieParent,
height: 250
},
title: {
text: (i+1) + '.Intensity ratio'
},
tooltip: {
pointFormat: '{series.name}: <b>{point.percentage:.1f}%</b>'
},
plotOptions: {
pie: {
allowPointSelect: true,
cursor: 'pointer',
dataLabels: {
enabled: true,
format: '<b>{point.name}</b>: {point.percentage:.1f} %',
style: {
color: (Highcharts.theme && Highcharts.theme.contrastTextColor) || 'black'
}
}
}
},
series: [{
name: 'Rate',
colorByPoint: true,
data: result[0].map[i].pie,
events: {
click: function(event) {
barColor = event.point.color;
var nextType = event.point.name;
var targets = '';
var sortableList = document.getElementById("sortableList");
for(var i = 0; i < sortableList.childNodes.length; i ++){
var w = sortableList.childNodes[i].childNodes[1].innerHTML.replace(/^[0-9]+./,"").split("/");
targets += "," + w[0] + "/" + w[1] + "/" + nextType;
}
targets = targets.substring(1);
document.getElementById("showButton").disabled = true;
document.getElementById("bar") .disabled = true;
document.getElementById("heatmap") .disabled = true;
document.getElementById("sortableList").style.display = "none";
var sortableList = document.getElementById("sortableList");
for(var i = sortableList.childNodes.length-1; i >= 0; i --)
sortableList.removeChild(sortableList.childNodes[i]);
retrieveChartData(targets, 'bar');
}
}
}]
});
}
// 絶対量か相対量か
var ratioCbox = document.createElement("input");
ratioCbox.setAttribute("type", "checkbox");
ratioCbox.setAttribute("checked", "no");
ratioCbox.id = "ratio";
ratioCbox.onchange = function(e){
setBarchartData();
};
var label = document.createElement("label");
label.setAttribute("for", "ratio");
label.innerHTML = "ratio";
document.getElementById("rate").appendChild(ratioCbox);
document.getElementById("rate").appendChild(label);
resizeChart();
}
// ヒートマップ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
var chart;
var gHeatmapData;
function getInchiOnHeatmap(seq, x, y) // 未使用
{
window.open("http://jcbl.jp/wiki/LBG" + gHeatmapData[seq].map[0].title.replace(/.*\//, "") + gHeatmapData[seq].x[x].replace("/","-"), "new");
// console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq][y][x]);
console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq].x[x].replace("/","-"));
}
function jumpToJcbl(inchi)
{
window.open("http://jcbl.jp/","new");
console.log(inchi);
}
// データの切り替え（表示/非表示、0-intensity) ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function setHeatmapData(index, seq)
{
var i = 0;
var length = gHeatmapData[index].map.length;
var target = [];
var cutoff = parseInt(document.getElementById("cutoffValue").value);
var xLabels = [];
for(var k = 0; k < chart[index].data[0].length; k ++){
var not0 = false;
for(var j = 0; j < length; j ++){
if(chart[index].data[j][k] >= cutoff){
not0 = true;
break;
}
}
target[k] = not0;
if(not0)
xLabels[i++] = gHeatmapData[index].x[k];
}
var data = [];
var yLabels = [];
chart[index].inchi = [];
i = 0;
// 表示されている中での最大値を取得する
var maxOfDisplayedAll = 0;
for(var j = 0; j < seq.length && j < length; j ++){
if(maxOfDisplayedAll < gHeatmapData[index].map[seq[j]].max)
maxOfDisplayedAll = gHeatmapData[index].map[seq[j]].max;
}
var max = 0;
for(var j = 0; j < seq.length && j < length; j ++){
if(document.getElementById("eachInRate").checked)
max = gHeatmapData[index].map[seq[j]].max;
else
max = maxOfDisplayedAll;
// max = gHeatmapData[index].maxOfAll; // 常に全ての最大値を基準にする場合はこちらを使う
chart[index].inchi[j] = [];
for(var k = 0,l = 0; k < gHeatmapData[index].map[seq[j]].data.length; k ++){
if(target[k]){
data[i] = [l++, seq.length-j-1, attrEscape(gHeatmapData[index].map[seq[j]].data[k][0] * 100 / max)];
chart[index].inchi[j][k] = inchiEscape(gHeatmapData[index].map[seq[j]].data[k][2]);
i ++;
}
}
yLabels[j] = (parseInt(seq[j])+1) + "." + attrEscape(gHeatmapData[index].map[seq[j]].title.replace(/\/[^\/]+$/, ""));
}
yLabels.reverse();
chart[index].zoomOut();
chart[index].series[0].setData(data, true);
chart[index].yAxis[0].setCategories(yLabels);
chart[index].xAxis[0].setCategories(xLabels);
}
// 表示 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function showHeatmap(result)
{
gHeatmapData = [];
var root = document.getElementById('container');
var sortableList = document.getElementById("sortableList");
chart = [];
gHeatmapData = result;
for(var i = 0; i < result.length; i ++){
// タイトル
var title = attrEscape(result[i].title);
// 親要素
var parent = document.createElement('div');
parent.id = 'container' + i;
root.appendChild(parent);
var index = 0;
var data = [];
var yLabels = [];
var length = result[i].map.length
var inchi = [];
var ratioData = [];
for(var j = 0; j < length; j ++){
inchi[j] = [];
ratioData[j] = [];
for(var k = 0; k < result[i].map[j].data.length; k ++){
data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].map[j].max)];
// data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].maxOfAll)];
inchi[j][k] = inchiEscape(result[i].map[j].data[k][2]);
ratioData[j][index] = data[index][2];
index ++;
}
yLabels[j] = (j+1) + "." + attrEscape(result[i].map[j].title.replace(/\/[^\/]+$/, ""));
}
yLabels.reverse();
for(var j = 0; j < result[i].x.length; j ++)
result[i].x[j] = attrEscape(result[i].x[j]);
// create ignore 0-intensity button
document.getElementById("cutoffValue").onchange = function(){
// 表示/非表示の切り替え // 下と同じなので、後でまとめる
for(var index = 0; index < chart.length; index ++){
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
}
};
// create sortable list
var listDiv = document.createElement("div");
listDiv.id = "sortableList" + i;
for(var j = 0; j < result[i].map.length; j ++){
var line = document.createElement("div");
var cbox = document.createElement("input");
cbox.setAttribute("type", "checkbox");
cbox.setAttribute("checked", "yes");
cbox.setAttribute("seq", j);
cbox.id = "item" + j;
cbox.onchange = function(e){
// 表示/非表示の切り替え
var index = this.parentElement.parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
};
line.appendChild(cbox);
var label = document.createElement("label");
label.setAttribute("for", "item" + j);
label.innerHTML = (j+1) + "." + escape(result[i].map[j].title);
line.appendChild(label);
listDiv.appendChild(line);
}
sortableList.appendChild(listDiv);
$('#sortableList' + i).sortable({
cursor: 'move',
update: function(event, ui){
var index = ui.item[0].parentElement.id.replace("sortableList", "");
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
}
});
$('#sortableList').sortable(false);
// それぞれのレート/全体でのレート
var rateCbox = document.createElement("input");
rateCbox.setAttribute("type", "checkbox");
rateCbox.setAttribute("checked", "yes");
rateCbox.id = "eachInRate";
rateCbox.onchange = function(e){
// rateの切り替え
var index = 0; // つであると仮定するので、複数ある場合は修正が必要なことに注意
var sortableList = document.getElementById("sortableList" + index);
var sequence = [];
for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){
if(sortableList.childNodes[i].childNodes[0].checked)
sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq");
}
setHeatmapData(index, sequence);
};
var label = document.createElement("label");
label.setAttribute("for", "eachInRate");
label.innerHTML = "Each in rate";
document.getElementById("rate").appendChild(rateCbox);
document.getElementById("rate").appendChild(label);
// ヒートマップ
chart[i] = new Highcharts.Chart({
chart: {
type: 'heatmap',
zoomType: 'xy',
animation: 1,
marginBottom: 0,
plotBorderWidth: 1,
renderTo: parent,
animation: true,
},
scrollbar: {
enabled: true
},
title: {
text: title,
align: 'left'
},
xAxis: {
categories: result[i].x,
opposite: true,
labels: {
rotation: -90,
style: {
fontSize: '11px',
fontFamily: 'Verdana, sans-serif'
},
step: 1
},
},
yAxis: {
categories: yLabels,
title: null,
labels: {
step: 1
}
},
colorAxis: {
min: 0,
max: 100,
minColor: '#ffffff',
maxColor: Highcharts.getOptions().colors[8]
},
legend: {
align: 'right',
layout: 'vertical',
margin: 0,
verticalAlign: 'top',
y: 100,
symbolHeight: 145
},
tooltip: {
formatter: function () {
return this.series.yAxis.categories[this.point.y] + '<br />' +
this.series.xAxis.categories[this.point.x] + '<br />' +
(Math.round(this.point.value*10)/10) + ' %';
}
},
series: [{
name: 'HEK',
borderWidth: 1,
data: data,
dataLabels: {
enabled: false,
color: '#000000'
},
point: {
events: {
/*mouseOver: function() {
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container", "");
var target = getTarget(this.series.chart.xAxis[0].labelGroup.element.childNodes, result[index].x[this.x]);
if(target != null){
target.css('fill', 'red');
target.css('fontWeight', 'bold');
}
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fill', 'red');
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fontWeight', 'bold');
},
mouseOut: function() {
var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container", "");
var target = getTarget(this.series.chart.xAxis[0].labelGroup.element.childNodes, result[index].x[this.x]);
if(target != null){
target.css('fill', '#666666');
target.css('fontWeight', '');
}
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fill', '#666666');
$(this.series.chart.yAxis[0].labelGroup.element.childNodes[this.y]).css('fontWeight', '');
},*/
click: function(event){
// var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container","");
getInchiOnHeatmap(0, event.point.x, event.point.y);
// jumpToJcbl(event.point.series.chart.inchi[event.point.y][event.point.x]);
}
}
}
}]
});
chart[i].inchi = inchi;
chart[i].data = ratioData;
//chart.setSize(600,300,false);
}
resizeChart();
}
// ※未使用※ ///////////////////////////////////////////////////////////////////////////////////////////////////////////////
function getTarget(children, target)
{
for(var i = 0; i < children.length; i ++){
if(target == children[i].childNodes[0].textContent){
return $(children[i]);
}
// console.log(children[i].childNodes[0].textContent);
}
return null;
}
